Stem-loop sequence gma-MIR399k

Accession

MI0033464 (change log)

Description

Glycine max miR399k stem-loop

Literature search

15 open access papers mention gma-MIR399k
(88 sentences)

Stem-loop

   u         a   a          a       -ug       gagg  uug 
5'  ugaggaaug uag gcaaaucucc uuggcag   ggaagua    gc   a
    ||||||||| ||| |||||||||| |||||||   |||||||    ||    
3'  auuuuuuac guc cguuuagagg aaccguu   ucuucgu    cg   a
   -         c   c          a       ugg       ---a  uac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr8: 9106143-9106243 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR399k

• gma-MIR399k: chr8: 9106143-9106243 [+]
• gma-MIR399f: chr8: 9110335-9110442 [-]

Database links

• miRBase Tracker:MI0033464

Mature sequence gma-miR399k

• Accession: MIMAT0041672
• Sequence: 71 - ugccaaaggagauuugcccug - 91
• Evidence: experimental; Illumina [1]

References

1. PMID:25747880 "Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean" Zhao M, Meyers BC, Cai C, Xu W, Ma J Plant Cell. 27:546-562(2015).