miRBase entry: gma-MIR399n

Stem-loop gma-MIR399n


Accession
MI0033500
Description
Glycine max gma-MIR399n precursor miRNA

Literature search
14 open access papers mention gma-MIR399n
(86 sentences)

Sequence

gcaaaucauucauagggcaugucucuuuuggcagguaauggugauuacuuuggauuaauuuagagcuaccaaaauaugucuuauauaguaaucaacuUGCCAAAGGAGAGCUGCCCUGugaguguuug
.((((.(((((((((((((..(((((((((((((((.....((((((((..((((..((((.(......).))))..)))).....)))))))))))))))))))))))..)))))))))))))))))

Structure
g    u             ug               aaugg        ---uu    ua    a ag 
 caaa cauucauagggca  ucucuuuuggcaggu     ugauuacu     ggau  auuu g  c
 |||| |||||||||||||  |||||||||||||||     ||||||||     ||||  |||| |   
 guuu gugaguGUCCCGU  AGAGGAAACCGUuca     acuaauga     ucug  uaaa c  u
-    -             CG               -----        uauau    ua    a ca 


Annotation confidence Not enough data
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Genome context
chr16: 36109955-36110082 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR399n
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR399n

Accession MIMAT0041708
Description Glycine max gma-miR399n mature miRNA
Sequence 98 - UGCCAAAGGAGAGCUGCCCUG - 118
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25747880
    Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
    "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
    "Plant Cell (2015) 27:546-562