Stem-loop sequence gma-MIR399n

Accession

MI0033500 (change log)

Description

Glycine max miR399n stem-loop

Literature search

14 open access papers mention gma-MIR399n
(86 sentences)

Stem-loop

   g    u             ug               aaugg        ---uu    ua    a ag 
5'  caaa cauucauagggca  ucucuuuuggcaggu     ugauuacu     ggau  auuu g  c
    |||| |||||||||||||  |||||||||||||||     ||||||||     ||||  |||| |   
3'  guuu gugagugucccgu  agaggaaaccguuca     acuaauga     ucug  uaaa c  u
   -    -             cg               -----        uauau    ua    a ca 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr16: 36109955-36110082 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR399n

• gma-MIR399n: chr16: 36109955-36110082 [+]
• gma-MIR399b: chr16: 36115809-36115909 [+]

Database links

• miRBase Tracker:MI0033500

Mature sequence gma-miR399n

• Accession: MIMAT0041708
• Sequence: 98 - ugccaaaggagagcugcccug - 118
• Evidence: experimental; Illumina [1]

References

1. PMID:25747880 "Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean" Zhao M, Meyers BC, Cai C, Xu W, Ma J Plant Cell. 27:546-562(2015).