Stem-loop sly-MIR7981f

Accession

MI0033700

Description

Solanum lycopersicum sly-MIR7981f precursor miRNA

Sequence

uaugcucaaaaucucagagacacacuuauacuauacuaagguccuauuaccccccuuaacuuauuuuauuaauaauuuuuuaccccuuuuuuagcuuacguggcacuaucuugugggcccaacgaugguugacuuuuuuucugaacuaaugccacuuaggcuaaaaagggguagaaaauuacauauaaaauaaguucagggggguaauaggaccuuaguauaguauAAGUGUGUCUCUGGAAUUUCGGGCauagg
(((((((.((((.(((((((((((((((((((((((((((((((((((((((((((.((((((((((((...(((((((((((((((((((.((((((.((((((.((((..((.((((.......)))).)).........))..)).)))))).)))))))))))))))))))))))))...)))))))))))).))))))))))))))))))))))))))))))))))))))))))).)))).)))))))..

Structure

--       a    c                                           u            uaa                   u      c      c  --  -------uu  g    ca 
  uaugcuc aaau ucagagacacacuuauacuauacuaagguccuauuaccccccu aacuuauuuuau   uaauuuuuuaccccuuuuu agcuua guggca ua  uc         gu ggcc  a
  ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   ||||||||||||||||||| |||||| |||||| ||  ||         || ||||  c
  auaCGGG UUUA GGUCUCUGUGUGAAuaugauaugauuccaggauaaugggggga uugaauaaaaua   auuaaaagauggggaaaaa ucggau caccgu au  ag         ca uugg  g
gg       C    A                                           c            uac                   -      u      a  ca  ucuuuuuuu  g    ua 

Annotation confidence Not enough data

Genome context

chr8: 34556987-34557241 [+]

Mature sly-miR7981f

• Accession: MIMAT0042026
• Description: Solanum lycopersicum sly-miR7981f mature miRNA
• Sequence: 227 - AAGUGUGUCUCUGGAAUUUCGGGC - 250
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195