Stem-loop sequence mes-MIR477j

Accession

MI0037909 (change log)

Description

Manihot esculenta miR477j stem-loop

Literature search

3 open access papers mention mes-MIR477j
(6 sentences)

Stem-loop

   --uaauuaaga        ca               a     u    ccaa      g 
5'            auggcagc  uuguucacucucccu aaggc ucaa    uuugug a
              ||||||||  ||||||||||||||| ||||| ||||    |||||| c
3'            uacugucg  aauaggugagaggga uuccg aguu    aaacac u
   aucguuuuuag        aa               a     u    --cg      a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Cassava4): scaffold03581: 762703-762817 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0037909

Mature sequence mes-miR477j

• Accession: MIMAT0045973
• Sequence: 26 - acucucccuaaaggcuucaac - 46
• Evidence: experimental; Illumina [1]

References

1. PMID:26822616 "High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs" Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN BMC Genomics. 17:85(2016).