Stem-loop mes-MIR482c

Accession

MI0037913

Description

Manihot esculenta mes-MIR482c precursor miRNA

Sequence

gagagggguugcugggagcuauggguauggggggauugggcaaaauugcuuggcuuuguuuauuagcagaggcuaaagcugauUUUUCCCAAGACCUCCCAUACCaguggccuccagcuguuuccucccc
..((((((..((((((.(((((.(((((((((((.(((((.(((((((((((.(((((((....))))))).)..)))).)))))).)))))..))))))))))).))))).))))))...))))))...

Structure

-ga      -uu      a     g           -a     c      -    -- g       u 
   gagggg   gcuggg gcuau gguaugggggg  uuggg aaaauu gcuu  g cuuuguu a
   ||||||   |||||| ||||| |||||||||||  ||||| |||||| ||||  | |||||||  
   cuccuu   cgaccu cggug CCAUACCCUCC  AACCC UUUuag cgaa  c gagacga u
ccc      ugu      c     a           AG     U      u    au g       u 

Annotation confidence Not enough data

Genome context

scaffold03604: 533085-533214 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mes-MIR482c

Mature mes-miR482c

• Accession: MIMAT0045977
• Description: Manihot esculenta mes-miR482c mature miRNA
• Sequence: 84 - UUUUCCCAAGACCUCCCAUACC - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26822616
   High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
   Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
   BMC Genomics (2016) 17:85