miRBase entry: mes-MIR482d

Stem-loop mes-MIR482d


Accession
MI0037914
Description
Manihot esculenta mes-MIR482d precursor miRNA

Literature search
1 open access papers mention mes-MIR482d
(1 sentences)

Sequence

agagagugcuagaggaaguuaauggagauggguggcucgggaagaagaaaaagaggccuagucuucUUCCCGACACCACCCAUUCCAUccacuuccuccaacuucucucuuuc
((((((.....((((((((..((((((.(((((((.((((((((((((...((....))..))))))))))))..)))))))))))))..))))))))......))))))...

Structure
---      -ugcua        ua      a       -c            aaa  a 
   agagag      gaggaagu  auggag ugggugg  ucgggaagaaga   ag g
   ||||||      ||||||||  |||||| |||||||  ||||||||||||   ||  
   ucucuc      cuccuuca  UACCUU ACCCACC  AGCCCUUcuucu   uc g
cuu      uucaac        cc      -       AC            -ga  c 


Annotation confidence Not enough data
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Genome context
scaffold03604: 533334-533446 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mes-MIR482d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mes-miR482d

Accession MIMAT0045978
Description Manihot esculenta mes-miR482d mature miRNA
Sequence 67 - UUCCCGACACCACCCAUUCCAU - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26822616
    High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
    Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
    BMC Genomics (2016) 17:85