Stem-loop sequence mes-MIR169ad

Accession

MI0037922 (change log)

Description

Manihot esculenta miR169ad stem-loop

Literature search

10 open access papers mention mes-MIR169ad
(28 sentences)

Stem-loop

   a    c   a        -           cu   -        a     ugcugguuugcauuucucguaugca 
5'  gagg aua caugaaga uaagagucugu  gau agccaagg ugacu                         a
    |||| ||| |||||||| |||||||||||  ||| |||||||| |||||                          
3'  uucc uau guacuuuu auucucggaca  uua ucgguucc acuga                         a
   c    a   c        u           cu   a        -     cggacuuuggaugaguucccgacgu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Cassava4): scaffold05005: 24104-24252 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mes-MIR169ad

• mes-MIR169u: scaffold05005: 20259-20360 [+]
• mes-MIR169z: scaffold05005: 23017-23111 [-]
• mes-MIR169w: scaffold05005: 23286-23394 [-]
• mes-MIR169ad: scaffold05005: 24104-24252 [+]
• mes-MIR169v: scaffold05005: 24359-24464 [+]

Database links

• miRBase Tracker:MI0037922

Mature sequence mes-miR169ad

• Accession: MIMAT0045986
• Sequence: 118 - ucacaggcucuuauuuuucaug - 139
• Evidence: experimental; Illumina [1]

References

1. PMID:26822616 "High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs" Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN BMC Genomics. 17:85(2016).