Stem-loop mes-MIR169ad

Accession

MI0037922

Description

Manihot esculenta mes-MIR169ad precursor miRNA

Literature search

10 open access papers mention mes-MIR169ad
(28 sentences)

Sequence

agaggcauaacaugaagauaagagucugucugauagccaaggaugacuugcugguuugcauuucucguaugcaaaugcagcccuugaguagguuucaggcagucaccuuggcuaauuUCACAGGCUCUUAUUUUUCAUGcuauaccuuc
.((((.(((.(((((((((((((((((((..(((((((((((.(((((.((((((((((((.......)))))))).)))).((((((.....)))))).))))))))))))).)))..))))))))))).)))))))).))).)))).

Structure

a    c   a        -           cu   -        a     ------------------u    -        uu 
 gagg aua caugaaga uaagagucugu  gau agccaagg ugacu                   gcug guuugcau  c
 |||| ||| |||||||| |||||||||||  ||| |||||||| |||||                   |||| ||||||||  u
 uucc uau GUACUUUU AUUCUCGGACA  uua ucgguucc acuga                   cgac uaaacgua  c
c    a   c        U           CU   a        -     cggacuuuggaugaguucc    g        ug 

Annotation confidence Low

Genome context

scaffold05005: 24104-24252 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from mes-MIR169ad

Mature mes-miR169ad

• Accession: MIMAT0045986
• Description: Manihot esculenta mes-miR169ad mature miRNA
• Sequence: 118 - UCACAGGCUCUUAUUUUUCAUG - 139
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26822616
   High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
   Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
   BMC Genomics (2016) 17:85