miRBase entry: mes-MIR169ad

Stem-loop mes-MIR169ad


Accession
MI0037922
Description
Manihot esculenta mes-MIR169ad precursor miRNA

Literature search
10 open access papers mention mes-MIR169ad
(28 sentences)

Sequence

agaggcauaacaugaagauaagagucugucugauagccaaggaugacuugcugguuugcauuucucguaugcaaaugcagcccuugaguagguuucaggcagucaccuuggcuaauuUCACAGGCUCUUAUUUUUCAUGcuauaccuuc
.((((.(((.(((((((((((((((((((..(((((((((((.(((((.((((((((((((.......)))))))).)))).((((((.....)))))).))))))))))))).)))..))))))))))).)))))))).))).)))).

Structure
a    c   a        -           cu   -        a     ------------------u    -        uu 
 gagg aua caugaaga uaagagucugu  gau agccaagg ugacu                   gcug guuugcau  c
 |||| ||| |||||||| |||||||||||  ||| |||||||| |||||                   |||| ||||||||  u
 uucc uau GUACUUUU AUUCUCGGACA  uua ucgguucc acuga                   cgac uaaacgua  c
c    a   c        U           CU   a        -     cggacuuuggaugaguucc    g        ug 


Annotation confidence Not enough data
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Genome context
scaffold05005: 24104-24252 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from mes-MIR169ad
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mes-miR169ad

Accession MIMAT0045986
Description Manihot esculenta mes-miR169ad mature miRNA
Sequence 118 - UCACAGGCUCUUAUUUUUCAUG - 139
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26822616
    High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
    Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
    BMC Genomics (2016) 17:85