Stem-loop sequence mes-MIR11891

Accession

MI0037923 (change log)

Description

Manihot esculenta miR11891 stem-loop

Literature search

1 open access papers mention mes-MIR11891
(3 sentences)

Stem-loop

   u           a      c              a    a   a   ua    ugcaccguuaauaaauaacaacaauuucu 
5'  uucacuucaag ucuaua uuuaauuuauguca aaua uau uug  auau                             a
    ||||||||||| |||||| |||||||||||||| |||| ||| |||  ||||                              
3'  aagugaaguuc agauau aaguuaaauacagu uuau aug aac  uaua                             g
   -           c      c              c    c   g   uc    cuauacauccaguuauaaagauucccaua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Cassava4): scaffold01045: 30015-30179 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0037923

Mature sequence mes-miR11891

• Accession: MIMAT0045987
• Sequence: 136 - cauaaauugaacuauagacc - 155
• Evidence: experimental; Illumina [1]

References

1. PMID:26822616 "High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs" Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN BMC Genomics. 17:85(2016).