Stem-loop sequence pte-mir-275

AccessionMI0038029 (change log)
DescriptionParasteatoda tepidariorum miR-275 stem-loop
Literature search

1 open access papers mention pte-mir-275
(2 sentences)

Stem-loop 
   ---a        a         ug     --g gcc 
5'     cgugcugc ucaggugcu  ugacu   c   c
       |||||||| |||||||||  |||||   |   u
3'     gcgcgaug aguccaugg  acuga   g   u
   aggc        a         --     aua acu
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates Overlapping transcripts
Scf5bK3_1778: 109272-109339 [+]
intergenic
Clustered miRNAs
< 10kb from pte-mir-275
pte-mir-275Scf5bK3_1778: 109272-109339 [+]
pte-mir-305Scf5bK3_1778: 111273-111334 [+]
Database links

Mature sequence pte-miR-275-5p

Accession MIMAT0046111
Sequence

1 -  

acgugcugcaucaggugcuugugacu

 - 26

Get sequence
Evidence experimental; Illumina [1]

Mature sequence pte-miR-275-3p

Accession MIMAT0046112
Sequence

44 -  

ucagguaccugaaguagcgcgcgga

 - 68

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:27324919 "Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum" Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP Genome Biol Evol. 8:2133-2144(2016).