Stem-loop sequence pte-mir-278b

Accession

MI0038035 (change log)

Description

Parasteatoda tepidariorum miR-278b stem-loop

Literature search

1 open access papers mention pte-mir-278b
(1 sentences)

Stem-loop

   --c    a      u      uua   guucua 
5'    cgga gagaau cccacc   acc      u
      |||| |||||| ||||||   |||       
3'    gccu cuuuua gggugg   ugg      a
   ucu    g      -      --c   aaaacg 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: Scf5bK3_214: 1515459-1515521 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0038035

Mature sequence pte-miR-278b-5p

• Accession: MIMAT0046122
• Sequence: 1 - ccggaagagaauucccaccuuaacc - 25
• Evidence: experimental; Illumina [1]

Mature sequence pte-miR-278b-3p

• Accession: MIMAT0046123
• Sequence: 42 - ucggugggauuuucguccgucu - 63
• Evidence: experimental; Illumina [1]

References

1. PMID:27324919 "Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum" Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP Genome Biol Evol. 8:2133-2144(2016).