Stem-loop sequence pte-mir-71-2

Accession

MI0038093 (change log)

Description

Parasteatoda tepidariorum miR-71-2 stem-loop

Literature search

2 open access papers mention pte-mir-71-2
(14 sentences)

Stem-loop

   --ug       u             ugugua 
5'     aaagaca ggguagugagaug      a
       ||||||| |||||||||||||       
3'     uuucugu uccaucacucuac      a
   gcag       -             uuugau 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates: Scf5bK3_595: 731101-731161 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pte-mir-71-2

• pte-mir-71-2: Scf5bK3_595: 731101-731161 [-]
• pte-mir-2f: Scf5bK3_595: 730975-731038 [-]
• pte-mir-2a: Scf5bK3_595: 726238-726302 [-]
• pte-mir-2b-1: Scf5bK3_595: 726122-726186 [-]

Database links

• miRBase Tracker:MI0038093

Mature sequence pte-miR-71-5p

• Accession: MIMAT0046219
• Sequence: 1 - ugaaagacauggguagugagaug - 23
• Evidence: experimental; Illumina [1]

Mature sequence pte-miR-71-3p

• Accession: MIMAT0046220
• Sequence: 40 - ucucacuaccuugucuuugacg - 61
• Evidence: experimental; Illumina [1]

References

1. PMID:27324919 "Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum" Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP Genome Biol Evol. 8:2133-2144(2016).