Stem-loop sequence pte-mir-993b-1

Accession

MI0038107 (change log)

Description

Parasteatoda tepidariorum miR-993b-1 stem-loop

Literature search

2 open access papers mention pte-mir-993b-1
(2 sentences)

Stem-loop

   -cuac        uc          uagac     
5'      ccuguaga  cgggcuuuug     ugcu 
        ||||||||  ||||||||||     ||| u
3'      ggacaucu  gcucgaagac     acga 
   ucuau        cu          ---uu     

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: Scf5bK3_833: 3580170-3580234 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0038107

Mature sequence pte-miR-993b-5p

• Accession: MIMAT0046245
• Sequence: 1 - cuacccuguagauccgggcuuuug - 24
• Evidence: experimental; Illumina [1]

Mature sequence pte-miR-993b-3p

• Accession: MIMAT0046246
• Sequence: 43 - gaagcucgucucuacagguaucu - 65
• Evidence: experimental; Illumina [1]

References

1. PMID:27324919 "Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum" Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP Genome Biol Evol. 8:2133-2144(2016).