Stem-loop sequence bta-mir-2285cz

Accession

MI0038431 (change log)

Description

Bos taurus miR-2285cz stem-loop

Literature search

11 open access papers mention bta-mir-2285cz
(15 sentences)

Stem-loop

   --         u         u  --u u 
5'   aaaaaguuc uuuggguuu uc   c a
     ||||||||| ||||||||| ||   |  
3'   uuuuuuaag aagcccaaa ag   g a
   ug         u         c  uau c 

Deep sequencing

6213 reads, 25 reads per million, 64 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr16: 54937929-54937984 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0038431

Mature sequence bta-miR-2285cz

• Accession: MIMAT0046706
• Sequence: 35 - caaacccgaaugaauuuuuugu - 56
• Deep sequencing: 9 reads, 8 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:26519053 "Deep sequencing shows microRNA involvement in bovine mammary gland adaptation to diets supplemented with linseed oil or safflower oil" Li R, Beaudoin F, Ammah AA, Bissonnette N, Benchaar C, Zhao X, Lei C, Ibeagha-Awemu EM BMC Genomics. 16:884(2015).