miRBase entry: 26519053

Deep sequencing shows microRNA involvement in bovine mammary gland adaptation to diets supplemented with linseed oil or safflower oil

PubMed ID 26519053
Authors Li R, Beaudoin F, Ammah AA, Bissonnette N, Benchaar C, Zhao X, Lei C, Ibeagha-Awemu EM
Journal BMC Genomics
Volume 16
Pages 884

There are 265 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
bta-mir-11986b MI0038345 62 chr20 10234322 10234378 - -
bta-mir-2285bk MI0038346 2 chr1 74829119 74829175 + -
bta-mir-2285bl MI0038347 2 chr28 10457830 10457895 - -
bta-mir-2285bm MI0038348 141 chr16 20708677 20708735 - -
bta-mir-2285bn MI0038349 33 chrX 68054309 68054368 - -
bta-mir-7180 MI0038350 13 chr16 33123783 33123841 - -
bta-mir-2285bo MI0038351 4 chr3 100095317 100095374 - -
bta-mir-11989 MI0038352 5 chr10 20843214 20843266 + -
bta-mir-11990 MI0038353 2 chr22 4306780 4306838 + -
bta-mir-1911 MI0038354 1 chrX 68770645 68770704 - -
bta-mir-11991 MI0038355 27 chr3 95478237 95478294 - High
bta-mir-11992 MI0038356 12 chr7 64348882 64348941 - -
bta-mir-2285bp MI0038357 10 chr15 79085414 79085474 - -
bta-mir-11993 MI0038358 5 chr6 109289613 109289666 - -
bta-mir-2285bq MI0038359 0 chr6 23736734 23736793 - -
bta-mir-2285br MI0038360 11 chr8 78063391 78063450 + High
bta-mir-2285bs MI0038361 29 chr1 1005437 1005497 - -
bta-mir-11986c MI0038362 29 chrX 40891497 40891556 - High
bta-mir-2285bt MI0038363 12 chr21 62129493 62129549 - -
bta-mir-2285bu-1 MI0038364 8 chr13 60619752 60619811 - -
bta-mir-2285bu-2 MI0038365 8 chr4 63416641 63416698 - -
bta-mir-2285bv MI0038366 2 chr7 111951709 111951762 + -
bta-mir-2285bw MI0038367 0 chr14 36312363 36312415 - -
bta-mir-2285bx MI0038368 8 chr15 45103398 45103455 + -
bta-mir-2285by MI0038369 5 chr7 20841273 20841328 + -
bta-mir-2285bz MI0038370 113 chr13 57596848 57596907 - -
bta-mir-11994 MI0038371 4 chr22 56971843 56971904 + -
bta-mir-11995 MI0038372 9 chr21 2313882 2313940 + -
bta-mir-11996 MI0038373 0 chr4 80242722 80242771 - -
bta-mir-2285ca MI0038374 5 chr5 110404881 110404940 + -
bta-mir-2285cb MI0038375 290 chr19 41582164 41582221 - -
bta-mir-2285cc MI0038376 5 chr13 42541803 42541860 - -
bta-mir-11997 MI0038377 1 chr21 28307924 28308012 + -
bta-mir-11998 MI0038378 6 chr13 34233014 34233072 - -
bta-mir-2285cd MI0038379 292 chr8 22097434 22097493 - -
bta-mir-1264 MI0038380 2 chrX 68668048 68668110 + -
bta-mir-2285ce MI0038381 41 chr29 29745971 29746028 + -
bta-mir-11999 MI0038382 8 chrX 55830756 55830814 - -
bta-mir-12000 MI0038383 4 chr7 13528617 13528677 + -
bta-mir-12001 MI0038384 1 chr5 110461365 110461424 + -
bta-mir-12002a MI0038385 None chr5 100833755 100833823 - -
bta-mir-12003 MI0038386 6 chr25 7981054 7981109 + -
bta-mir-2285cf MI0038387 11 chr1 128884965 128885021 - -
bta-mir-12004 MI0038388 15 chr20 31888442 31888493 + -
bta-mir-2285cg MI0038389 3 chr24 50706686 50706744 - -
bta-mir-12005-1 MI0038390 3 chr5 38431267 38431325 + -
bta-mir-12005-2 MI0038391 3 chr5 38431264 38431322 - -
bta-mir-12006 MI0038392 2 chrX 118953351 118953411 + -
bta-mir-12007 MI0038393 None chr7 27524471 27524546 - -
bta-mir-299-2 MI0038394 3 chr21 67841948 67841999 - -
bta-mir-148d MI0038395 1 chr4 70663559 70663619 - -
bta-mir-2285ch MI0038396 5 chr1 123739555 123739616 + -
bta-mir-2285ci MI0038397 36 chrX 2997906 2997963 + -
bta-mir-6775 MI0038398 4 chr2 126989447 126989509 + -
bta-mir-2285cj MI0038399 34 chrX 23238008 23238066 + -
bta-mir-12008 MI0038400 5 chr16 67803380 67803440 + -
bta-mir-2285ck MI0038401 6 chr16 45922350 45922418 + -
bta-mir-12009 MI0038402 None chr23 16453839 16453898 + -
bta-mir-12010 MI0038403 1 chr13 61919209 61919264 + -
bta-mir-12011 MI0038404 2 chr15 30001042 30001100 + -
bta-mir-12012 MI0038405 42 chr7 74208977 74209028 + -
bta-mir-2285cl MI0038406 3 chr28 33612084 33612142 + -
bta-mir-2285cm MI0038407 41 chr1 34131583 34131643 - High
bta-mir-2285cn MI0038408 7 chr14 61733839 61733898 - -
bta-mir-12013 MI0038409 2 chr4 102775008 102775072 - -
bta-mir-6501 MI0038410 4 chr1 1256977 1257040 - -
bta-mir-2285co MI0038411 3 chr21 24963097 24963155 - -
bta-mir-2285cp MI0038412 6 chrX 61070223 61070278 - -
bta-mir-2285cq MI0038413 4 chr10 76905742 76905800 + -
bta-mir-12014 MI0038414 2 chr11 106159044 106159099 + -
bta-mir-12015 MI0038415 0 chr20 71638862 71638913 + -
bta-mir-2285cr-1 MI0038416 8 chr10 37415874 37415935 - -
bta-mir-2285cr-2 MI0038417 0 chr5 106263814 106263869 + -
bta-mir-2285cs MI0038418 7 chr6 63379731 63379789 + -
bta-mir-12002b MI0038419 1 chr5 100867186 100867249 + -
bta-mir-2285ct MI0038420 6 chr20 798474 798532 - -
bta-mir-12016 MI0038421 None chr26 21301171 21301231 - -
bta-mir-12017 MI0038422 3 chr24 54905569 54905629 - -
bta-mir-2285cu MI0038423 2 chr12 13963804 13963862 - -
bta-mir-2285cv-1 MI0038424 0 chr19 18415196 18415252 - -
bta-mir-2285cv-2 MI0038425 0 chr16 55045312 55045368 - -
bta-mir-12018 MI0038426 2 chr7 24295539 24295596 + -
bta-mir-2285cw-1 MI0038427 6 chr12 67434839 67434895 + -
bta-mir-2285cw-2 MI0038428 6 chr10 3364001 3364060 - -
bta-mir-2285cx MI0038429 8 chr9 10648828 10648886 - -
bta-mir-2285cy MI0038430 2 chr21 45101290 45101349 - -
bta-mir-2285cz MI0038431 2 chr16 54937929 54937984 + -
bta-mir-2285da MI0038432 14 chr8 60435957 60436015 - -
bta-mir-12019 MI0038433 None chr25 41627700 41627775 + -
bta-mir-2285db MI0038434 0 chr9 63371182 63371238 + -
bta-mir-2285dc MI0038435 7 chr14 70492051 70492111 - -
bta-mir-12020 MI0038436 None chr2 26546097 26546166 + -
bta-mir-2285dd MI0038437 13 chrX 142513005 142513061 + -
bta-mir-2285de MI0038438 1 chr1 63245391 63245447 + -
bta-mir-12021 MI0038439 None chr8 60534145 60534201 + -
bta-mir-12022 MI0038440 107 chr2 104907676 104907735 - -
bta-mir-12023 MI0038441 10 chr29 43487241 43487294 + -
bta-mir-12024 MI0038442 3 chr4 47166878 47166944 - -
bta-mir-12025 MI0038443 0 chr21 67097984 67098042 + -
bta-mir-12026-1 MI0038444 0 chr2 136955738 136955783 + -
bta-mir-12026-2 MI0038445 0 None None -
bta-mir-12027 MI0038446 1 chr14 4397341 4397398 + -
bta-mir-12028 MI0038447 1 chr13 45124056 45124119 + -
bta-mir-12029 MI0038448 0 chr25 41534233 41534294 - -
bta-mir-12030 MI0038449 0 chr11 24390957 24391032 - -
bta-mir-12031 MI0038450 2 chr10 19395552 19395617 + -
bta-mir-12032 MI0038451 2 chr20 2290230 2290286 + -
bta-mir-12033 MI0038452 1 chr23 29003567 29003633 - -
bta-mir-12034 MI0038453 15 chr13 38671225 38671296 - -
bta-mir-12035 MI0038454 0 chr7 14377873 14377935 - -
bta-mir-2285df MI0038455 1 chr13 43281524 43281580 + -
bta-mir-194b-2 MI0038456 12 chr29 44018309 44018361 - -
bta-mir-12036 MI0038457 3 chr17 34865979 34866040 - -
bta-mir-12037 MI0038458 0 chr17 9827497 9827562 + -
bta-mir-12038 MI0038459 1 chr18 58325807 58325864 - -
bta-mir-12039 MI0038460 None chr3 110419184 110419242 - -
bta-mir-12040 MI0038461 None chr7 23601773 23601834 - -
bta-mir-2285dg MI0038462 0 chr26 35397231 35397292 - -
bta-mir-12041 MI0038463 6 chr19 24090530 24090579 - -
bta-mir-191b MI0038464 4 chr22 51727536 51727599 - -
bta-mir-12042 MI0038465 3 chr25 10475926 10475985 - -
bta-mir-12043 MI0038466 0 chr3 88161712 88161764 - -
bta-mir-3065 MI0038467 1 chr19 52407338 52407400 - -
bta-mir-12044 MI0038468 3 chr12 11331299 11331363 - -
bta-mir-12045 MI0038469 0 chr1 944425 944487 - -
bta-mir-507b MI0038470 2 chrX 29288071 29288128 + -
bta-mir-2285dh MI0038471 7 chr10 18711798 18711858 - -
bta-mir-2285di MI0038472 0 chr7 47670638 47670698 + -
bta-mir-2285dj MI0038473 2 chr13 10496152 10496209 - -
bta-mir-12046 MI0038474 1 chr15 82179205 82179258 - -
bta-mir-2285dk MI0038475 6 chr1 47296014 47296077 - -
bta-mir-12047 MI0038476 None chrX 125454855 125454916 + -
bta-mir-12048 MI0038477 1 chrX 13625988 13626049 - -
bta-mir-12049 MI0038478 2 chr11 75616193 75616249 - -
bta-mir-12050 MI0038479 None chr16 42913372 42913431 + -
bta-mir-12051 MI0038480 2 chr24 31961493 31961543 + -
bta-mir-1949 MI0038481 78 chr7 52406413 52406480 + -
bta-mir-2285dl-1 MI0038482 18 chr10 33968801 33968859 - -
bta-mir-2285dl-2 MI0038483 18 chr13 21882960 21883019 - -
bta-mir-2285dm MI0038484 0 chr5 95331175 95331240 - -
bta-mir-12052 MI0038485 None chr25 38856311 38856365 - -
bta-mir-12053 MI0038486 None chr2 116132081 116132137 - -
bta-mir-12054 MI0038487 None chr5 57532078 57532143 + -
bta-mir-12055 MI0038488 0 chr9 97092798 97092859 + -
bta-mir-12056 MI0038489 1 chr11 99885648 99885736 + -
bta-mir-12057 MI0038490 5 chr18 50491100 50491168 + -
bta-mir-12058 MI0038491 21 chr20 40548629 40548692 - -
bta-mir-12059 MI0038492 1 chr19 20937478 20937557 - -
bta-mir-12060 MI0038493 3 chr25 26608256 26608314 - -
bta-mir-12061 MI0038494 None chr8 76624308 76624355 - -
bta-mir-12062 MI0038495 None chr2 1023039 1023094 - -
bta-mir-12063 MI0038496 2 chr9 30336920 30337001 + -
bta-mir-12064 MI0038497 0 chr3 20557287 20557339 + -
hsa-let-7a-1 MI0000060 46519 chr9 94175957 94176036 + High
hsa-let-7a-2 MI0000061 46265 chr11 122146522 122146593 - High
hsa-let-7a-3 MI0000062 46706 chr22 46112749 46112822 + High
hsa-mir-21 MI0000077 28570 chr17 59841266 59841337 + High
hsa-mir-26a-1 MI0000083 11638 chr3 37969404 37969480 + High
hsa-mir-27a MI0000085 3484 chr19 13836440 13836517 - High
hsa-mir-28 MI0000086 1128 chr3 188688781 188688866 + High
hsa-mir-30a MI0000088 5468 chr6 71403551 71403621 - High
hsa-mir-96 MI0000098 613 chr7 129774692 129774769 - High
hsa-mir-98 MI0000100 616 chrX 53556223 53556341 - High
hsa-mir-99a MI0000101 1967 chr21 16539089 16539169 + High
hsa-mir-103a-2 MI0000108 15897 chr20 3917494 3917571 + High
hsa-mir-103a-1 MI0000109 15862 chr5 168560896 168560973 - High
hsa-mir-196a-1 MI0000238 1109 chr17 48632490 48632559 - High
hsa-mir-199a-1 MI0000242 10221 chr19 10817426 10817496 - High
hsa-mir-148a MI0000253 13144 chr7 25949919 25949986 - High
hsa-mir-30d MI0000255 2889 chr8 134804876 134804945 - High
hsa-mir-34a MI0000268 442 chr1 9151668 9151777 - High
hsa-mir-196a-2 MI0000279 1227 chr12 53991738 53991847 + High
hsa-mir-199a-2 MI0000281 10210 chr1 172144535 172144644 - High
hsa-mir-23b MI0000439 4243 chr9 95085208 95085304 + -
hsa-mir-27b MI0000440 4618 chr9 95085445 95085541 + High
hsa-mir-125b-1 MI0000446 5007 chr11 122099757 122099844 - High
hsa-mir-143 MI0000459 27646 chr5 149428918 149429023 + High
hsa-mir-145 MI0000461 20797 chr5 149430646 149430733 + High
hsa-mir-152 MI0000462 813 chr17 48037161 48037247 - High
hsa-mir-125a MI0000469 5127 chr19 51693254 51693339 + High
hsa-mir-125b-2 MI0000470 5102 chr21 16590237 16590325 + High
hsa-mir-194-1 MI0000488 266 chr1 220118157 220118241 - -
hsa-mir-194-2 MI0000732 297 chr11 64891355 64891439 - High
hsa-mir-200a MI0000737 1523 chr1 1167863 1167952 + High
hsa-mir-99b MI0000746 1445 chr19 51692612 51692681 + High
hsa-mir-26a-2 MI0000750 11698 chr12 57824609 57824692 - High
hsa-mir-378a MI0000786 6859 chr5 149732825 149732890 + High
hsa-mir-342 MI0000805 887 chr14 100109655 100109753 + High
hsa-mir-148b MI0000811 1329 chr12 54337216 54337314 + High
hsa-mir-338 MI0000814 385 chr17 81125883 81125949 - High
hsa-mir-335 MI0000816 4193 chr7 130496111 130496204 + High
hsa-mir-196b MI0001150 1494 chr7 27169480 27169563 - High
hsa-mir-484 MI0002468 612 chr16 15643294 15643372 + -
hsa-mir-486-1 MI0002470 1411 chr8 41660441 41660508 - High
hsa-mir-1271 MI0003814 246 chr5 176367946 176368031 + High
bta-mir-26a-2 MI0004731 21998 chr5 56156321 56156404 + High
bta-mir-103-1 MI0004736 1346 chr20 189696 189767 - -
bta-mir-148a MI0004737 20563 chr4 70663557 70663624 + High
bta-mir-21 MI0004742 17881 chr19 11138471 11138542 + High
bta-mir-27a MI0004746 1180 chr7 13046007 13046084 - High
bta-mir-30d MI0004747 5195 chr14 8141427 8141496 + High
bta-mir-484 MI0004749 129 chr25 14245864 14245926 + -
bta-mir-99a MI0004751 1583 chr1 19985570 19985650 - High
bta-mir-125a MI0004752 2184 chr18 58267247 58267332 + High
bta-mir-125b-1 MI0004753 1129 chr15 33484663 33484750 - High
bta-mir-145 MI0004756 2141 chr7 63080500 63080587 + High
bta-mir-199a-1 MI0004758 3207 chr16 40646156 40646259 - High
bta-mir-27b MI0004760 20982 chr8 83483816 83483912 + High
bta-mir-98 MI0005025 634 chrX 97465740 97465858 - High
bta-mir-148b MI0005030 279 chr5 25896187 25896276 - High
bta-mir-200a MI0005037 1139 chr16 52694578 52694663 - High
bta-mir-30a MI0005054 28347 chr9 10818870 10818936 - -
bta-let-7a-1 MI0005057 11865 chr8 87363854 87363933 + High
bta-mir-342 MI0005059 354 chr21 66986215 66986308 + High
bta-mir-23b MI0005066 1056 None None High
bta-let-7a-2 MI0005451 11827 chr15 33533448 33533519 - -
bta-let-7a-3 MI0005452 11878 chr5 117457806 117457879 + High
bta-mir-103-2 MI0005456 1352 chr13 51962355 51962430 - -
bta-mir-125b-2 MI0005457 1232 chr1 19935732 19935816 - High
bta-mir-34a MI0005464 45 chr16 45359550 45359656 + -
bta-mir-99b MI0005469 1181 chr18 58266580 58266649 + High
hsa-mir-885 MI0005560 59 chr3 10394489 10394562 - High
hsa-mir-103b-1 MI0007261 0 chr5 168560904 168560965 + -
hsa-mir-103b-2 MI0007262 0 chr20 3917502 3917563 - -
bta-mir-143 MI0009743 223303 chr7 63079071 63079171 + -
bta-mir-152 MI0009748 219 chr19 39247030 39247115 + High
bta-mir-16a MI0009753 574 chr12 19660386 19660474 - High
bta-mir-194-2 MI0009765 4433 chr29 44018295 44018377 + High
bta-mir-196a-2 MI0009766 96 chr5 26246499 26246583 - High
bta-mir-196a-1 MI0009767 118 chr19 38661613 38661714 + High
bta-mir-196b MI0009768 201 chr4 69566921 69567005 + -
bta-mir-199a-2 MI0009770 3202 chr7 16580964 16581034 - High
bta-mir-26a-1 MI0009784 21970 chr22 11513974 11514063 + -
bta-mir-28 MI0009785 1738 chr1 79540068 79540153 - High
bta-mir-335 MI0009804 104 chr4 95385649 95385740 + High
bta-mir-338 MI0009805 105 chr19 52407324 52407415 + -
bta-mir-378-1 MI0009819 4644 chr7 63343197 63343262 + High
bta-mir-486 MI0009843 516 chr27 36501847 36501970 - -
bta-mir-885 MI0009904 97 chr22 55292168 55292241 - -
bta-mir-96 MI0009911 130 chr4 94724422 94724524 - -
bta-mir-1271 MI0010480 38 chr7 39336532 39336617 + High
bta-mir-2299 MI0011309 24 chr12 29753514 29753592 - High
bta-mir-199c MI0011364 158 chr19 26881087 26881162 + -
bta-mir-1388 MI0012206 137 chr13 54595416 54595507 + High
bta-mir-194-1 MI0012208 5679 chr16 24405220 24405316 - High
bta-mir-378-2 MI0013052 5068 chr4 10779742 10779817 + -
hsa-mir-378b MI0014154 37 chr3 10330229 10330285 + -
bta-mir-3431 MI0014498 105 chrX 34879430 34879526 - High
hsa-mir-378c MI0015825 4181 chr10 130962588 130962668 - -
hsa-mir-4286 MI0015894 195 chr8 10666978 10667070 + -
hsa-mir-378d-2 MI0003840 3410 chr8 93916022 93916119 - -
hsa-mir-378d-1 MI0016749 3385 chr4 5923275 5923328 - -
hsa-mir-378e MI0016750 246 chr5 170028488 170028566 + -
hsa-mir-378f MI0016756 31 chr1 23929070 23929147 + -
hsa-mir-378g MI0016761 30 None None -
hsa-mir-378h MI0016808 4 chr5 154829458 154829540 + -
hsa-mir-378i MI0016902 24 chr22 41923222 41923297 - -
bta-mir-4286-1 MI0021119 12 chr19 40861010 40861085 - -
bta-mir-4286-2 MI0021120 16 chrX 58196784 58196846 - -
hsa-mir-378j MI0021273 1 chr17 37614931 37615039 - -
bta-mir-378b MI0022279 286 chr15 30904740 30904837 + -
bta-mir-378c MI0022299 749 chr24 31823795 31823863 - -
hsa-mir-486-2 MI0023622 1403 chr8 41660444 41660507 + High
bta-mir-378d MI0031501 115 chr19 8813899 8813989 - -
bta-mir-194b MI0032935 20 chr16 24405226 24405310 + -



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