Stem-loop bta-mir-342

Accession

MI0005059

Description

Bos taurus bta-mir-342 precursor miRNA mir-342

Gene
family

RF00760; mir-342

Literature search

70 open access papers mention bta-mir-342
(227 sentences)

Sequence

6485233 reads, 1287.0 reads per million, 320 experiments

uggaagcgggugcgaggcgAGGGGUGCUAUCUGUGGUUGAGGACacggcaaaugaaacugUCUCACACAGAAAUCGCACCCAucuccucggccc
.......((((.(((((.((.((((((..((((((..((((.(((.(..........))))))))))))))....)))))).)).)))))))))

Structure

uggaagc    g     c  G      --UA      GU    G   c gcaa 
       gggu cgagg gA GGGUGC    UCUGUG  UGAG ACa g    a
       |||| ||||| || ||||||    ||||||  |||| ||| |     
       cccg gcucc cu CCCACG    AGACAC  ACUC Ugu c    u
-------    -     u  A      CUAA      --    -   - aaag 

Annotation confidence Medium

Comments

The miR-342 mature product reported by Gu et al. is truncated at the 3' end [2].

Genome context

21: 65057646-65057739 [+]

Mature bta-miR-342-5p

• Accession: MIMAT0060967
• Description: Bos taurus bta-miR-342-5p mature miRNA
• Sequence: 20 - AGGGGUGCUAUCUGUGGUUGAGGAC - 44
• Evidence: experimental ; cloned [1-3]

Mature bta-miR-342-3p

• Accession: MIMAT0003846
• Description: Bos taurus bta-miR-342-3p mature miRNA
• Sequence: 61 - UCUCACACAGAAAUCGCACCCA - 82
• Evidence: experimental ; cloned [1-3]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 17306260
   Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
   "Gu Z, Eleswarapu S, Jiang H"
   "FEBS Lett (2007) 581:981-988


3. PubMed ID: 19267191
   Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
   "Long JE, Chen HX"
   "Biochem Genet (2009) 47:329-343