Stem-loop bta-mir-148a

Accession

MI0004737

Description

Bos taurus bta-mir-148a precursor miRNA mir-148

Gene
family

RF00248; mir-148

Literature search

169 open access papers mention bta-mir-148a
(1202 sentences)

Sequence

171359895 reads, 73150.0 reads per million, 321 experiments

gaggcAAAGUUCUGAGACACUCCGACUcugaauaugauagaagUCAGUGCACUACAGAACUUUGUcuc
((((((((((((((((.((((..(((((((.......))).))))))))..)).))))))))))))))

Structure

              -  -A    CC    -   aa 
gaggcAAAGUUCUG AG  CACU  GACU cug  u
|||||||||||||| ||  ||||  |||| |||  a
cucUGUUUCAAGAC UC  GUGA  CUga gau  u
              A  AC    --    a   ag 

Annotation confidence High

Genome context

4: 69949480-69949547 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-148a

Mature bta-miR-148a-5p

• Accession: MIMAT0060929
• Description: Bos taurus bta-miR-148a-5p mature miRNA
• Sequence: 6 - AAAGUUCUGAGACACUCCGACU - 27
• Evidence: experimental ; cloned [1-2]

Mature bta-miR-148a-3p

• Accession: MIMAT0003522
• Description: Bos taurus bta-miR-148a-3p mature miRNA
• Sequence: 44 - UCAGUGCACUACAGAACUUUGU - 65
• Evidence: experimental ; cloned [1-2]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 19267191
   Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
   "Long JE, Chen HX"
   "Biochem Genet (2009) 47:329-343