Stem-loop bta-mir-27b

Accession

MI0004760

Description

Bos taurus bta-mir-27b precursor miRNA mir-27

Gene
family

RF00644; mir-27

Literature search

163 open access papers mention bta-mir-27b
(625 sentences)

Sequence

48964357 reads, 31904.0 reads per million, 321 experiments

accucucugacgaggugcAGAGCUUAGCUGAUUGGUGAACAgugacugguuuccgcuuugUUCACAGUGGCUAAGUUCUGCAccugaagagaaggug
((((((((....(((((((((((((((((.((((.(((((((....(((...)))..))))))))))))))))))))))))))))..)))).)))).

Structure

-    -    gacg                 G    G       ugac   u 
 accu cucu    aggugcAGAGCUUAGCU AUUG UGAACAg    ugg  
 |||| ||||    ||||||||||||||||| |||| |||||||    ||| u
 ugga gaga    uccACGUCUUGAAUCGG UGAC ACUUguu    gcc  
g    a    --ag                 -    -       --uc   u 

Annotation confidence High

Genome context

8: 81617240-81617336 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from bta-mir-27b

Mature bta-miR-27b-5p

• Accession: MIMAT0060939
• Description: Bos taurus bta-miR-27b-5p mature miRNA
• Sequence: 19 - AGAGCUUAGCUGAUUGGUGAACA - 41
• Evidence: experimental ; cloned [1-2]

Mature bta-miR-27b-3p

• Accession: MIMAT0003546
• Description: Bos taurus bta-miR-27b-3p mature miRNA
• Sequence: 61 - UUCACAGUGGCUAAGUUCUGCA - 82
• Evidence: experimental ; cloned [1-2]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 17306260
   Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
   "Gu Z, Eleswarapu S, Jiang H"
   "FEBS Lett (2007) 581:981-988