Stem-loop bta-mir-125a

Accession

MI0004752

Description

Bos taurus bta-mir-125a precursor miRNA

Literature search

142 open access papers mention bta-mir-125a
(587 sentences)

Sequence

6104218 reads, 3437.0 reads per million, 321 experiments

ugccggccucugcgUCCCUGAGACCCUUUAACCUGUGAggacguccagggucACAGGUGAGGUUCUUGGGAGCcuggcguccggcc
.((((((((..((.((((.((((.((((..((((((((...(.....)..)))))))))))).))))))))))..)).).))))).

Structure

u     - -  cu  g    U    C    UA        gga g 
 gccgg c cu  gc UCCC GAGA CCUU  ACCUGUGA   c u
 ||||| | ||  || |||| |||| ||||  ||||||||   | c
 cggcc g gg  CG AGGG UUCU GGAG  UGGACAcu   g c
c     u c  uc  -    -    U    --        -gg a 

Annotation confidence High

Genome context

18: 57689557-57689642 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-125a

Mature bta-miR-125a-5p

• Accession: MIMAT0003538
• Description: Bos taurus bta-miR-125a-5p mature miRNA
• Sequence: 15 - UCCCUGAGACCCUUUAACCUGUGA - 38
• Evidence: experimental ; cloned [1-2], Array [3], qRT-PCR [3]

Mature bta-miR-125a-3p

• Accession: MIMAT0060934
• Description: Bos taurus bta-miR-125a-3p mature miRNA
• Sequence: 53 - ACAGGUGAGGUUCUUGGGAGC - 73
• Evidence: experimental ; cloned [1-2], Array [3], qRT-PCR [3]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 17306260
   Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
   "Gu Z, Eleswarapu S, Jiang H"
   "FEBS Lett (2007) 581:981-988


3. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677