Stem-loop bta-mir-378d

Accession

MI0031501

Description

Bos taurus bta-mir-378d precursor miRNA

Gene family

MIPF0000168; mir-378

Literature search

24 open access papers mention bta-mir-378d
(100 sentences)

Sequence

11356 reads, 115 reads per million, 65 experiments

ugggcuuucuggguccaggcagcaguaugcucagggaggcagcuacggugcagagaaagggagcuCUGGACUUGGAGUCAGAAGACCucag
.(((.(((((((.((((((...(((...((((......(((.(...).))).........)))).)))..)))))).))))))).)))...

Structure

--u   c       g      cag   uau    ---agggag   g u 
   ggg uuucugg uccagg   cag   gcuc         gca c  
   ||| ||||||| ||||||   |||   ||||         ||| | a
   uCC GAAGACU AGGUUC   GUC   cgag         cgu g  
gac   A       G      -AG   --u    ggaaagaga   g c 

Annotation confidence Not enough data

Genome context

chr19: 8813899-8813989 [-]

Mature bta-miR-378d

• Accession: MIMAT0036972
• Description: Bos taurus bta-miR-378d mature miRNA
• Sequence: 66 - CUGGACUUGGAGUCAGAAGACC - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24021155
   Profiling microRNA expression in bovine alveolar macrophages using RNA-seq
   "Vegh P, Foroushani AB, Magee DA, McCabe MS, Browne JA, Nalpas NC, Conlon KM, Gordon SV, Bradley DG, MacHugh DE, Lynn DJ"
   "Vet Immunol Immunopathol (2013) 155:238-244