Stem-loop bta-mir-98

Accession

MI0005025

Description

Bos taurus bta-mir-98 precursor miRNA

Literature search

85 open access papers mention bta-mir-98
(630 sentences)

Sequence

1293055 reads, 870.0 reads per million, 321 experiments

aggacucugcucaugcuggggUGAGGUAGUAAGUUGUAUUGUUgugggguagggauuuuaggccccaauuugaagauaaCUAUACAACUUACUACUUUCCcugguguguagcacauuca
..((...((((((((((((((.(((((((((((((((((.((((((((((...........)))))).........)))).))))))))))))))))))))))))))).))))...)).

Structure

ag  cuc    -          U                 U    ---------      aggg 
  ga   ugcu caugcugggg GAGGUAGUAAGUUGUAU GUUg         uggggu    a
  ||   |||| |||||||||| ||||||||||||||||| ||||         ||||||    u
  cu   acga guguggucCC UUUCAUCAUUCAACAUA Caau         accccg    u
-a  uac    u          -                 U    agaaguuua      gauu 

Annotation confidence High

Genome context

X: 90985646-90985764 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-98

Mature bta-miR-98-5p

• Accession: MIMAT0003809
• Description: Bos taurus bta-miR-98-5p mature miRNA
• Sequence: 22 - UGAGGUAGUAAGUUGUAUUGUU - 43
• Evidence: experimental ; cloned [1], Array [2], qRT-PCR [2]

Mature bta-miR-98-3p

• Accession: MIMAT0060951
• Description: Bos taurus bta-miR-98-3p mature miRNA
• Sequence: 80 - CUAUACAACUUACUACUUUCC - 100
• Evidence: experimental ; cloned [1], Array [2], qRT-PCR [2]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677