Stem-loop gga-mir-449d

Accession

MI0039506

Description

Gallus gallus gga-mir-449d precursor miRNA

Literature search

4 open access papers mention gga-mir-449d
(7 sentences)

Sequence

189 reads, 11 reads per million, 4 experiments

gugugugaugauuAGGCAGUGUAUUGUUAGUUAGCUGCucuucauacaccAGCAACUAACUACACUGCCACAuuagcacauca
..(((((.((((..(((((((((..(((((((.((((............))))))))))))))))))))..)))).)))))..

Structure

gu     a    uA         UU       A    Cucuu 
  gugug ugau  GGCAGUGUA  GUUAGUU GCUG     c
  ||||| ||||  |||||||||  ||||||| ||||      
  uacac auuA  CCGUCACAU  CAAUCAA CGAc     a
ac     g    CA         --       -    cacau 

Annotation confidence Low

Genome context

chrZ: 16702080-16702162 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from gga-mir-449d

Mature gga-miR-449d-5p

• Accession: MIMAT0048647
• Description: Gallus gallus gga-miR-449d-5p mature miRNA
• Sequence: 14 - AGGCAGUGUAUUGUUAGUUAGCUGC - 38
• Evidence: experimental ; Illumina [2]

Mature gga-miR-449d-3p

• Accession: MIMAT0048648
• Description: Gallus gallus gga-miR-449d-3p mature miRNA
• Sequence: 51 - AGCAACUAACUACACUGCCACA - 72
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 29079676
   Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
   "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
   Genome Res (2017) 12:1961-1973


2. PubMed ID: 26473382
   A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
   "Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ"
   "Annu Rev Genet (2015) 49:213-242