Stem-loop gga-mir-12216

Accession

MI0040666

Description

Gallus gallus gga-mir-12216 precursor miRNA

Sequence

11 reads, 1 reads per million, 3 experiments

cgGGCGGGGGCGCGGGGUGCUGAgccguccuuuggggucucuccccgcgugggccuccccccgcUCAGCACCCCUCCGUCCCCGCAGU
...(((((((((.((((((((((((.((((..(((((.....)))))...))))........))))))))))))..)))))))))...

Structure

cgG         -C            -------c    -uu     u 
   GCGGGGGCG  GGGGUGCUGAgc        gucc   ugggg c
   |||||||||  ||||||||||||        ||||   ||||| u
   CGCCCCUGC  CCCCACGACUcg        cggg   gcccc c
UGA         CU            ccccccuc    ugc     u 

Annotation confidence Not enough data

Genome context

chr10: 1255070-1255157 [+]

Mature gga-miR-12216-5p

• Accession: MIMAT0049901
• Description: Gallus gallus gga-miR-12216-5p mature miRNA
• Sequence: 3 - GGCGGGGGCGCGGGGUGCUGA - 23
• Evidence: experimental ; Illumina [1]

Mature gga-miR-12216-3p

• Accession: MIMAT0049902
• Description: Gallus gallus gga-miR-12216-3p mature miRNA
• Sequence: 65 - UCAGCACCCCUCCGUCCCCGCAGU - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29079676
   Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
   "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
   Genome Res (2017) 12:1961-1973