Stem-loop sequence gga-mir-2184b

Accession

MI0040690 (change log)

Description

Gallus gallus miR-2184b stem-loop

Stem-loop

   --   -         cucaca   a   ug 
5'   cgg caguaggag      ugc ggc  c
     ||| |||||||||      ||| |||  g
3'   gcu gucauucuc      acg ccg  u
   gg   u         aacuac   -   cu 

Deep sequencing

1483 reads, 20 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr19: 5515022-5515080 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-2184b

• gga-mir-132c: chr19: 5515771-5515836 [+]
• gga-mir-212: chr19: 5515770-5515834 [-]
• gga-mir-132b: chr19: 5515205-5515263 [+]
• gga-mir-132a: chr19: 5515203-5515261 [-]
• gga-mir-2184a: chr19: 5515026-5515081 [+]
• gga-mir-2184b: chr19: 5515022-5515080 [-]

Database links

• miRBase Tracker:MI0040690

Mature sequence gga-miR-2184b-5p

• Accession: MIMAT0049946
• Sequence: 1 - cggcaguaggagcucacaugc - 21
• Deep sequencing: 12 reads, 3 experiments
• Evidence: experimental; Illumina [1]

Mature sequence gga-miR-2184b-3p

• Accession: MIMAT0049947
• Sequence: 38 - acaucaacucuuacuguucgg - 58
• Deep sequencing: 1471 reads, 4 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:29079676 "Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation" Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H Genome Res. [Epub prior to print](2017).