Stem-loop sequence gga-mir-212

AccessionMI0040694 (change log)
DescriptionGallus gallus miR-212 stem-loop
Literature search

1 open access papers mention gga-mir-212
(1 sentences)

Stem-loop 
   --a  u     c       c      -  gc  a 
5'    cc uggcu uagacug uuacug cu  gu g
      || ||||| ||||||| |||||| ||  ||  
3'    gg acuga aucugac aaugac gg  ca g
   auc  u     c       -      a  -a  g
Get sequence
Deep sequencing
24395 reads, 180 reads per million, 5 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Gallus_gallus-5.0; GCA_000002315.3) Overlapping transcripts
chr19: 5515770-5515834 [-]
intergenic
Clustered miRNAs
< 10kb from gga-mir-212
gga-mir-132cchr19: 5515771-5515836 [+]
gga-mir-212chr19: 5515770-5515834 [-]
gga-mir-132bchr19: 5515205-5515263 [+]
gga-mir-132achr19: 5515203-5515261 [-]
gga-mir-2184achr19: 5515026-5515081 [+]
gga-mir-2184bchr19: 5515022-5515080 [-]
Database links

Mature sequence gga-miR-212-5p

Accession MIMAT0049954
Sequence

1 -  

accuuggcucuagacugcuuacu

 - 23

Get sequence
Deep sequencing21417 reads, 5 experiments
Evidence experimental; Illumina [1]

Mature sequence gga-miR-212-3p

Accession MIMAT0049955
Sequence

44 -  

uaacagucuacagucauggcu

 - 64

Get sequence
Deep sequencing2803 reads, 5 experiments
Evidence experimental; Illumina [1]

References

1
PMID:29079676 "Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation" Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H Genome Res. [Epub prior to print](2017).