miRBase entry: gga-mir-12248

Stem-loop gga-mir-12248


Accession
MI0040712
Description
Gallus gallus gga-mir-12248 precursor miRNA


Sequence

UCAGCCCAUUUGUCCUCAUGCCUggaacugugcaGGUACGGACAUGGGGGCUUUGG
..(((((...(((((...((((((........)))))).)))))...)))))....

Structure
--UC     AUU     UCA      gaa 
    AGCCC   UGUCC   UGCCUg   c
    |||||   |||||   ||||||    
    UCGGG   ACAGG   AUGGac   u
GGUU     GGU     --C      gug 


Annotation confidence Not enough data
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Genome context
chr23: 4355778-4355833 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from gga-mir-12248
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-12248-5p

Accession MIMAT0049985
Description Gallus gallus gga-miR-12248-5p mature miRNA
Sequence 1 - UCAGCCCAUUUGUCCUCAUGCCU - 23
Evidence experimental
Illumina [1]

Mature gga-miR-12248-3p

Accession MIMAT0049986
Description Gallus gallus gga-miR-12248-3p mature miRNA
Sequence 35 - GGUACGGACAUGGGGGCUUUGG - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973