miRBase entry: gga-mir-122b-1

Stem-loop gga-mir-122b-1


Accession
MI0040772
Description
Gallus gallus gga-mir-122b-1 precursor miRNA

Literature search
16 open access papers mention gga-mir-122b-1
(86 sentences)

Sequence

55088 reads, 0 reads per million, 5 experiments
UUUAGUGUGAUAAUGGCGUUUGauagauuggacacAAACACCAUUGUCACACUCCAua
...(((((((((((((.(((((............))))).))))))))))))).....

Structure
--UUU             C     auaga 
     AGUGUGAUAAUGG GUUUG     u
     ||||||||||||| |||||      
     UCACACUGUUACC CAAAc     u
auACC             A     acagg 


Annotation confidence Not enough data
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Genome context
chrW: 2525199-2525256 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-122b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-122b-5p

Accession MIMAT0050092
Description Gallus gallus gga-miR-122b-5p mature miRNA
Sequence 1 - UUUAGUGUGAUAAUGGCGUUUG - 22
Evidence experimental
Illumina [1]

Mature gga-miR-122b-3p

Accession MIMAT0050093
Description Gallus gallus gga-miR-122b-3p mature miRNA
Sequence 36 - AAACACCAUUGUCACACUCCA - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973