miRBase entry: mdo-mir-205b

Stem-loop mdo-mir-205b


Accession
MI0040817
Description
Monodelphis domestica mdo-mir-205b precursor miRNA


Sequence

150 reads, 14 reads per million, 4 experiments
GCUUCACUCCACUGAAAUCUGAuuagauaugagacaGACUCCGGUGGAAUGAAGGACa
.(((((.(((((((...((((.(((....)))..))))...))))))).)))))....

Structure
---G     C       AAA    -A   g 
    CUUCA UCCACUG   UCUG  uua a
    ||||| |||||||   ||||  |||  
    GAAGU AGGUGGC   AGac  agu u
aCAG     A       CUC    ag   a 


Annotation confidence Not enough data
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Genome context
chr2: 116544497-116544554 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-mir-205b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-205b-5p

Accession MIMAT0050163
Description Monodelphis domestica mdo-miR-205b-5p mature miRNA
Sequence 1 - GCUUCACUCCACUGAAAUCUGA - 22
Evidence experimental
Illumina [1]

Mature mdo-miR-205b-3p

Accession MIMAT0050164
Description Monodelphis domestica mdo-miR-205b-3p mature miRNA
Sequence 37 - GACUCCGGUGGAAUGAAGGAC - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973