miRBase entry: mdo-mir-1545d-4

Stem-loop mdo-mir-1545d-4


Accession
MI0040953
Description
Monodelphis domestica mdo-mir-1545d-4 precursor miRNA


Sequence

335 reads, 11 reads per million, 5 experiments
UGUGCCCUGGGAUAGAUAAGCGAuccccuuccauucCCUUUUCUAUCCAUGGCACUGGu
.(((((...(((((((.(((.((...........)).))).)))))))..)))))....

Structure
---U     CUG       U   C  uccc 
    GUGCC   GGAUAGA AAG GA    c
    |||||   ||||||| ||| ||    u
    CACGG   CCUAUCU UUC cu    u
uGGU     -UA       U   C  uacc 


Annotation confidence High
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Genome context
chrX: 13953361-13953419 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from mdo-mir-1545d-4
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-1545d-3p

Accession MIMAT0050387
Description Monodelphis domestica mdo-miR-1545d-3p mature miRNA
Sequence 37 - CCUUUUCUAUCCAUGGCACUGG - 58
Evidence experimental
Illumina [1]

Mature mdo-miR-1545d-4-5p

Accession MIMAT0050395
Description Monodelphis domestica mdo-miR-1545d-4-5p mature miRNA
Sequence 1 - UGUGCCCUGGGAUAGAUAAGCGA - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973