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16 publications mentioning gga-mir-124a

Open access articles that are associated with the species Gallus gallus and mention the gene name mir-124a. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 37
Our results show that miRNAs display a wide variety of expression profiles over the whole life of the silkworm, including continuous expression from embryo to adult (miR-184), up-regulation over the entire life cycle (let-7 and miR-100), down-regulation over the entire life cycle (miR-124), expression associated with embryogenesis (miR-29 and miR-92), up-regulation from early 3 [rd ]instar to pupa (miR-275), and complementary pulses in expression between miR-34b and miR-275. [score:18]
miR-124 was sharply up-regulated to peak levels from the time of its initial expression in the day 6 embryo, followed by down-regulation, despite waning in early 2 [nd ]and early 3 [rd ]instar larvae and early 3 [rd ]molt larvae, and waxing in late 2 [nd ]and late 3 [rd ]instar larvae and late 3 [rd ]molt larvae. [score:9]
miR-124 was typically down-regulated during silkworm development from day 6 embryo to adult moth, and undetectable after the 3 [rd ]instar larva stage (Figure 1A, Additional file 4). [score:5]
At this time-point, 8 miRNAs were initially expressed (including miR-29b, miR-34b, and miR-124). [score:3]
The miR-124 level at the late 1 [st ]instar larval stage was two-fold higher than that during the early 1 [st ]instar larval stage. [score:1]
anti-miR-276-5p, anti-miR-124 and anti-miR-263b displayed signals higher than the threshold of 1,000 at the late 3 [rd ]molt and 4 [th ]molt stages. [score:1]
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2
[+] score: 32
The most abundant miRNA in our regulated set, tgu-miR-124, consistently met the statistical test for significant down-regulation by song, in each of six separate experiments (three Illumina comparisons, two TaqMan analyses in Additional File 1, Table S4, and the TaqMan comparison of song vs. [score:5]
miR-124 also regulates adult neurogenesis, and its overexpression promotes neuronal differentiation [42, 43] and neurite outgrowth [44]. [score:4]
Chronic cocaine administration results in down-regulation of miR-124 in the rodent mesolimbic dopaminergic system [41]. [score:4]
Probe sequences used for each target miRNA are given in Table 4. Table 4 Probes used for Taqman analysis of specific miRNA sequences miRBase name Company name Sequence detected tgu-let-7a let-7a 5'-UGAGGUAGUAGGUUGUAUAGUU-3' tgu-let-7f let-7f 5'-UGAGGUAGUAGAUUGUAUAGUU-3' tgu-miR-124 miR-124 5'-UAAGGCACGCGGUGAAUGCC-3' tgu-miR-9 miR-9 5'-UCUUUGGUUAUCUAGCUGUAUGA-3' tgu-miR-129-5p miR-129-5p 5'-CUUUUUGCGGUCUGGGCUUGC-3' tgu-miR-129-3p miR-129-3p 5'-AAGCCCUUACCCCAAAAAGCAU-3' tgu-miR-29a miR-29c 5'-UAGCACCAUUUGAAAUCGGU-3' tgu-miR-92 miR-92a 5'-UAUUGCACUUGUCCCGGCCUGU-3' tgu-miR-25 miR-25 5'-CAUUGCACUUGUCUCGGUCUGA-3' RNU6B RNU6B 5'-CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU-3' tgu-miR-2954-5p novel51F-5p 5'-GCUGAGAGGGCUUGGGGAGAGGA-3' tgu-miR-2954-3p novel51F-3p 5'-CAUCCCCAUUCCACUCCUAGCA-3' (Northern validated) tgu-miR-2954R-5p novel51R-5p 5'-UGCUAGGAGUGGAAUGGGGAUG-3' tgu-miR-2954R-3p novel51R-3p 5'-UCCUCUCCCCAAGCCCUCUCAGC-3' Northern blotting to confirm novel miRNA tgu-miR-2954-3p was performed by modifying the protocol of [97]. [score:3]
Probe sequences used for each target miRNA are given in Table 4. Table 4 Probes used for Taqman analysis of specific miRNA sequences miRBase name Company name Sequence detected tgu-let-7a let-7a 5'-UGAGGUAGUAGGUUGUAUAGUU-3' tgu-let-7f let-7f 5'-UGAGGUAGUAGAUUGUAUAGUU-3' tgu-miR-124 miR-124 5'-UAAGGCACGCGGUGAAUGCC-3' tgu-miR-9 miR-9 5'-UCUUUGGUUAUCUAGCUGUAUGA-3' tgu-miR-129-5p miR-129-5p 5'-CUUUUUGCGGUCUGGGCUUGC-3' tgu-miR-129-3p miR-129-3p 5'-AAGCCCUUACCCCAAAAAGCAU-3' tgu-miR-29a miR-29c 5'-UAGCACCAUUUGAAAUCGGU-3' tgu-miR-92 miR-92a 5'-UAUUGCACUUGUCCCGGCCUGU-3' tgu-miR-25 miR-25 5'-CAUUGCACUUGUCUCGGUCUGA-3' RNU6B RNU6B 5'-CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU-3' tgu-miR-2954-5p novel51F-5p 5'-GCUGAGAGGGCUUGGGGAGAGGA-3' tgu-miR-2954-3p novel51F-3p 5'-CAUCCCCAUUCCACUCCUAGCA-3' (Northern validated) tgu-miR-2954R-5p novel51R-5p 5'-UGCUAGGAGUGGAAUGGGGAUG-3' tgu-miR-2954R-3p novel51R-3p 5'-UCCUCUCCCCAAGCCCUCUCAGC-3' Northern blotting to confirm novel miRNA tgu-miR-2954-3p was performed by modifying the protocol of [97]. [score:3]
In the developing chick neural tube, miR-124a is a component of a regulatory network that controls the transition between neural progenitors and post-mitotic neurons [42]. [score:2]
Perhaps tgu-miR-124 is a regulatory link between experience and neurogenesis - further study of this fascinating possibility is clearly warranted. [score:2]
In studies in other species, miR-124 has been linked to brain plasticity and development in several contexts. [score:2]
In nine out of ten cases, we observed the same direction of song response by TaqMan as in the small RNA-seq experiment, although the P-value by TaqMan was below 0.05 in only five cases (tgu-miR-124, tgu-miR-29a, tgu-miR-92, tgu-129-5p, and tgu-miR-2954-3p, Additional File 1, Table S4). [score:2]
The network includes well-characterized conserved miRNA known to have roles in neuronal differentiation (miR-124), and novel miRNAs that can target genes that control neuronal differentiation (tgu-miR-2954-3p). [score:1]
In these same animals, normal song, but not SEN, triggered a significant decrease in the levels of tgu-miR-124, tgu-mir-129-5p, tgu-miR-92 and tgu-miR-2954-3p (Additional File 2, Figure S3 panels A-C, H). [score:1]
Three miRNAs consistently decreased after song (tgu-miR-92, tgu-miR-124, tgu-miR-129-5p) and two increased (tgu-miR-25, tgu-miR-192). [score:1]
To test for song-specificity of the miRNA response, we conducted a further TaqMan experiment assessing the levels of six miRNAs (tgu-miR-124, tgu-miR-92, tgu-miR-129-5p, and three miRNAs derived from the tgu-miR-2954 locus, next section), in birds who had heard either a normal song or a carefully matched non-song acoustic stimulus, "song enveloped noise" (SEN). [score:1]
Five conserved miRNAs showed significant and consistent changes in copy number after song exposure across three biological replications of the song-silence comparison, with two increasing (tgu-miR-25, tgu-miR-192) and three decreasing (tgu-miR-92, tgu-miR-124, tgu-miR-129-5p). [score:1]
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3
[+] score: 24
Other miRNAs from this paper: gga-mir-1602, gga-mir-1612, gga-mir-1669, gga-mir-1710, gga-mir-1782
These results indicate that miR-124a, miR-1669, miR-1710 and miR-1782, influence AHCYL1 expression in vitro via its 3′-UTR which suggests that post-transcriptional events regulate or influence AHCYL1 expression in the chick oviduct. [score:6]
As illustrated in Figures 5C and 5D, in the presence of miR-124a, miR-1669, miR-1710, miR-1782, the intensity and percentage of GFP -expressing cells (27.7% in control vs. [score:3]
However, expression of miR-124a and miR-1669 was decreased in DES -treated oviducts (P<0.05). [score:3]
For the dual fluorescence reporter assay, the fusion constructs containing the DsRed gene and either miR-124a, miR-1602, miR-1612, miR-1669, miR-1710 or miR-1782 were designed to be co-expressed under control of the CMV promoter (pcDNA-DsRed-miRNA). [score:2]
0049204.g005 Figure 5 In vitro target assay of miR-124a, miR-1602, miR-1612, miR-1669, miR-1710 and miR-1782 on AHCYL1 transcript. [score:2]
In vitro target assay of miR-124a, miR-1602, miR-1612, miR-1669, miR-1710 and miR-1782 on AHCYL1 transcript. [score:2]
In addition, we propose that, of these four miRNAs, miR-124a and miR-1669 are closely related to the regulatory pathways of oviduct development and differentiation in chickens; however, this requires further investigation. [score:1]
[C and D] After co-transfection of pcDNA-eGFP-3′UTR for the AHCYL1 transcript and pcDNA-DsRed-miRNA for the miR-124a, miR-1669, miR-1710 and miR-1782, the fluorescence signals of GFP and DsRed were detected using fluorescent microscopy [C] and FACS [D]. [score:1]
14.2% in miR-124a, 17.1% in miR-1669, 19.4% in the miR-1782 and 23.2% in miR-1710) were decreased. [score:1]
[A] Diagram of miR-124a, miR-1669, miR-1710 and miR-1782 binding sites in AHCYL1 3′-UTR. [score:1]
org/miRDB/) revealed six putative binding sites for miR-124a, miR-1602, miR-1612, miR-1669, miR-1710 and miR-1782 (Figure 5A). [score:1]
However, as illustrated in Figure 5E, the in vivo DES -mediated decrease in miR-124a and miR-1669 supports this hypothesis, whereas the DES -mediated increase in miR-1710 and miR-1782 is inconsistent with the in vitro data. [score:1]
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4
[+] score: 13
circHIPK3 upregulates insulin secretion and beta cell activity by binds miR-124-3p and miR-338-3p to increase expression of Slc2a2, Akt1 and Mtpn (Stoll et al., 2018). [score:6]
Circular RNA HIPK2 regulates astrocyte activation via cooperation of autophagy and ER stress by targeting MIR124-2HG. [score:4]
miR-124 and miR-203 are epigenetically silenced tumor-suppressive microRNAs in hepatocellular carcinoma. [score:3]
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5
[+] score: 9
In the mature and immature chicken ovary libraries, known miRNAs had a broad range of expression levels; some (such as miR-10a, 21 and 101) were found to have more than hundreds of thousands of sequence reads, while others (such as miR-124a, 3540 and 1759) had less than 20 (Additional file 1: Table S2), indicating that expression varies significantly among different miRNA families. [score:5]
Among the down-regulated miRNAs, gga-miR-375 had the highest fold-change with 11.345-fold, followed by gga-miR-217, gga-miR-458b, gga-miR-449c and gga-miR-124a with more than 6-fold (Additional file 1: Table S4). [score:4]
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6
[+] score: 9
Other miRNAs from this paper: gga-mir-29a, gga-mir-29b-1, gga-mir-130b, gga-mir-29c, gga-mir-29b-2
Epigenetic silencing of the tumor suppressor miR-124a by aberrant DNA hypermehtylation in colorectal cancer cell line HCT-116 resulted in its target gene cyclin D kinase-6 overexpression and tumor suppressor gene retinoblastoma phosphorylation, both of which affects cell cycle progression [39]. [score:9]
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7
[+] score: 8
When we considered the miRNAs marked by H3K27me3 as whole, we did not find any correlation between the expression and H3K27me3 levels; but for some individual miRNA, such as gga-mir-124a and gga-mir-310, we found very good negative correlation between the expression and H3K27me3 level (R [2] = 0.7773 and 0.6632 respectively, and Figure S6B). [score:4]
The expression of the following miRNAs was detected: gga-let-7i, gga-mir-130a, gga-mir-130b, gga-mir-199-2, gga-mir-1639, gga-mir-1a-2, gga-mir-124a, gga-mir-219, and gga-mir-310. [score:3]
7i: gga-let-7i, 130b:gga-mir-130b, 1639: gga-mir-1639, 199-2: gga-mir-199-2, 1a-2: gga-mir-1a-2, 124a: gga-mir-124a, 130a: gga-mir-130a, 219: gga-mir-219, 301: gga-mir-301. [score:1]
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8
[+] score: 7
Drosophila miR-124 regulates neuroblast proliferation through its target anachronism. [score:4]
miR-124 activity is required to support proliferation of neuroblasts in the larval brain by limiting expression of Anachronism (Weng and Cohen, 2012). [score:3]
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9
[+] score: 5
Third, bioinformatic analyses have indicated that several evolutionarily conserved miRNAs (miR-8, miR-1, miR-124, miR-71, and miR-195) in schistosomes may regulate phylogenetically conserved mRNA targets (Cheng and Jin, 2012); however, experimental confirmation of these results is needed. [score:4]
In addition, some S. japonicum miRNAs (e. g., miR-1b, miR-124, miR-190, et al. ) also displayed evolutionary conservation among Homo sapiens, Mus musculus, Caenorhabditis elegans, and Drosophila melanogaster (Cheng and Jin, 2012). [score:1]
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10
[+] score: 5
Moreover, a single intraperitoneal injection of SFV4-miR-124 into mice with implanted CT-2A orthotopic gliomas showed significant inhibition of tumor growth and improved survival rates. [score:3]
An interesting approach comprises the introduction of micro RNA-124 (miR-124) into an SFV4 vector [90]. [score:1]
As IFN-1 tolerance has been associated with the SFV nsP3-nsP4 genes, conditionally replicating SFV4-miR-124 virus was able to replicate in neurons and allowed targeting of gliomas otherwise sensitive to IFN-1. Evaluation of CT-2A mouse astrocytoma cells and IFN-1 pretreated human glioblastoma cells showed increased oncolytic potency. [score:1]
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11
[+] score: 4
Interestingly, miRNA -mediated exchange of BAF variants was described during neuronal differentiation, where BAF53a is downregulated by miR-9* and miR-124 (Yoo et al., 2009). [score:4]
[1 to 20 of 1 sentences]
12
[+] score: 4
However, neither miR-124a-3p nor miR-124b were differentially expressed miRNA in our previous miRNA experiment [17]. [score:3]
Two miRNA (miR-124a-3p and miR-124b) and four miRNA clusters (miR-19-3p, miR-218-5p, miR-124-3p, and miR-30-5p) shared by three databases were found to be potentially combine the 3′UTR of ELOVL5, respectively (Figure 2A,B and Figure S3). [score:1]
[1 to 20 of 2 sentences]
13
[+] score: 3
Wang X Sulforaphane improves chemotherapy efficacy by targeting cancer stem cell-like properties via the miR-124/IL-6R/STAT3 axisSci. [score:3]
[1 to 20 of 1 sentences]
14
[+] score: 3
Other miRNAs from this paper: hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3, hsa-let-7b, hsa-let-7c, hsa-let-7d, hsa-let-7e, hsa-let-7f-1, hsa-let-7f-2, hsa-mir-17, hsa-mir-24-1, hsa-mir-24-2, hsa-mir-25, mmu-let-7g, mmu-let-7i, mmu-mir-124-3, mmu-mir-9-2, mmu-mir-134, mmu-mir-137, mmu-mir-138-2, mmu-mir-145a, mmu-mir-24-1, hsa-mir-192, mmu-mir-194-1, mmu-mir-200b, hsa-mir-7-1, hsa-mir-7-2, hsa-mir-7-3, hsa-mir-215, hsa-mir-221, hsa-mir-200b, mmu-mir-296, mmu-let-7d, mmu-mir-106b, hsa-let-7g, hsa-let-7i, hsa-mir-124-1, hsa-mir-124-2, hsa-mir-124-3, hsa-mir-137, hsa-mir-138-2, hsa-mir-145, hsa-mir-9-1, hsa-mir-9-2, hsa-mir-9-3, hsa-mir-134, hsa-mir-138-1, hsa-mir-194-1, mmu-mir-192, mmu-mir-200a, mmu-let-7a-1, mmu-let-7a-2, mmu-let-7b, mmu-let-7c-1, mmu-let-7c-2, mmu-let-7e, mmu-let-7f-1, mmu-let-7f-2, mmu-mir-24-2, mmu-mir-346, hsa-mir-200c, mmu-mir-17, mmu-mir-25, mmu-mir-200c, mmu-mir-221, mmu-mir-124-1, mmu-mir-124-2, mmu-mir-9-1, mmu-mir-9-3, mmu-mir-138-1, mmu-mir-7a-1, mmu-mir-7a-2, mmu-mir-7b, hsa-mir-194-2, mmu-mir-194-2, hsa-mir-106b, hsa-mir-200a, hsa-mir-296, hsa-mir-369, hsa-mir-346, mmu-mir-215, gga-let-7i, gga-let-7a-3, gga-let-7b, gga-let-7c, gga-mir-221, gga-mir-17, gga-mir-138-1, gga-mir-194, gga-mir-215, gga-mir-137, gga-mir-7-2, gga-mir-138-2, gga-let-7g, gga-let-7d, gga-let-7f, gga-let-7a-1, gga-mir-200a, gga-mir-200b, gga-mir-124b, gga-let-7a-2, gga-let-7j, gga-let-7k, gga-mir-7-3, gga-mir-7-1, gga-mir-24, gga-mir-7b, gga-mir-9-2, dre-mir-7b, dre-mir-7a-1, dre-mir-7a-2, dre-mir-192, dre-mir-221, dre-mir-430a-1, dre-mir-430b-1, dre-mir-430c-1, dre-let-7a-1, dre-let-7a-2, dre-let-7a-3, dre-let-7a-4, dre-let-7a-5, dre-let-7a-6, dre-let-7b, dre-let-7c-1, dre-let-7c-2, dre-let-7d-1, dre-let-7d-2, dre-let-7e, dre-let-7f, dre-let-7g-1, dre-let-7g-2, dre-let-7h, dre-let-7i, dre-mir-7a-3, dre-mir-9-1, dre-mir-9-2, dre-mir-9-4, dre-mir-9-3, dre-mir-9-5, dre-mir-9-6, dre-mir-9-7, dre-mir-17a-1, dre-mir-17a-2, dre-mir-24-4, dre-mir-24-2, dre-mir-24-3, dre-mir-24-1, dre-mir-25, dre-mir-92b, dre-mir-124-1, dre-mir-124-2, dre-mir-124-3, dre-mir-124-4, dre-mir-124-5, dre-mir-124-6, dre-mir-137-1, dre-mir-137-2, dre-mir-138-1, dre-mir-145, dre-mir-194a, dre-mir-194b, dre-mir-200a, dre-mir-200b, dre-mir-200c, dre-mir-430c-2, dre-mir-430c-3, dre-mir-430c-4, dre-mir-430c-5, dre-mir-430c-6, dre-mir-430c-7, dre-mir-430c-8, dre-mir-430c-9, dre-mir-430c-10, dre-mir-430c-11, dre-mir-430c-12, dre-mir-430c-13, dre-mir-430c-14, dre-mir-430c-15, dre-mir-430c-16, dre-mir-430c-17, dre-mir-430c-18, dre-mir-430a-2, dre-mir-430a-3, dre-mir-430a-4, dre-mir-430a-5, dre-mir-430a-6, dre-mir-430a-7, dre-mir-430a-8, dre-mir-430a-9, dre-mir-430a-10, dre-mir-430a-11, dre-mir-430a-12, dre-mir-430a-13, dre-mir-430a-14, dre-mir-430a-15, dre-mir-430a-16, dre-mir-430a-17, dre-mir-430a-18, dre-mir-430i-1, dre-mir-430i-2, dre-mir-430i-3, dre-mir-430b-2, dre-mir-430b-3, dre-mir-430b-4, dre-mir-430b-6, dre-mir-430b-7, dre-mir-430b-8, dre-mir-430b-9, dre-mir-430b-10, dre-mir-430b-11, dre-mir-430b-12, dre-mir-430b-13, dre-mir-430b-14, dre-mir-430b-15, dre-mir-430b-16, dre-mir-430b-17, dre-mir-430b-18, dre-mir-430b-5, dre-mir-430b-19, dre-mir-430b-20, mmu-mir-470, hsa-mir-485, hsa-mir-496, dre-let-7j, mmu-mir-485, mmu-mir-543, mmu-mir-369, hsa-mir-92b, gga-mir-9-1, hsa-mir-671, mmu-mir-671, mmu-mir-496a, mmu-mir-92b, hsa-mir-543, gga-mir-124a-2, mmu-mir-145b, mmu-let-7j, mmu-mir-496b, mmu-let-7k, gga-mir-124c, gga-mir-9-3, gga-mir-145, dre-mir-138-2, dre-mir-24b, gga-mir-9-4, mmu-mir-9b-2, mmu-mir-124b, mmu-mir-9b-1, mmu-mir-9b-3, gga-mir-9b-1, gga-let-7l-1, gga-let-7l-2, gga-mir-9b-2
MiR-124a regulates proliferation of neural progenitor cells through Notch signaling pathway. [score:1]
let-7. miR-124. [score:1]
miR-124 is one of the most enriched miRNAs within the CNS (Landgraf et al., 2007). [score:1]
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15
[+] score: 1
In S. japonicum, Cai et al demonstrated miR-7-5p, miR-61, miR-219-5p, miR-125a, miR-125b, miR-124-3p, and miR-1 were dominant in males, while bantam, miR-71b-5p, miR-3479-5p and miR-Novel-23-5p were predominantly found in the female parasites [45]. [score:1]
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16
[+] score: 1
Other miRNAs from this paper: hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3, hsa-let-7b, hsa-let-7c, hsa-let-7d, hsa-let-7e, hsa-let-7f-1, hsa-let-7f-2, hsa-mir-17, hsa-mir-25, hsa-mir-92a-1, hsa-mir-92a-2, hsa-mir-105-1, hsa-mir-105-2, dme-mir-1, dme-mir-10, mmu-let-7g, mmu-let-7i, mmu-mir-1a-1, mmu-mir-124-3, mmu-mir-134, mmu-mir-10b, hsa-mir-10a, hsa-mir-10b, dme-mir-92a, dme-mir-124, dme-mir-92b, mmu-let-7d, dme-let-7, hsa-let-7g, hsa-let-7i, hsa-mir-1-2, hsa-mir-124-1, hsa-mir-124-2, hsa-mir-124-3, hsa-mir-134, mmu-let-7a-1, mmu-let-7a-2, mmu-let-7b, mmu-let-7c-1, mmu-let-7c-2, mmu-let-7e, mmu-let-7f-1, mmu-let-7f-2, mmu-mir-92a-2, hsa-mir-1-1, mmu-mir-1a-2, mmu-mir-10a, mmu-mir-17, mmu-mir-25, mmu-mir-124-1, mmu-mir-124-2, mmu-mir-92a-1, hsa-mir-379, mmu-mir-379, mmu-mir-412, gga-let-7i, gga-let-7a-3, gga-let-7b, gga-let-7c, gga-mir-92-1, gga-mir-17, gga-mir-1a-2, gga-mir-10b, gga-let-7g, gga-let-7d, gga-let-7f, gga-let-7a-1, gga-mir-1a-1, gga-mir-124b, gga-mir-1b, gga-let-7a-2, gga-let-7j, gga-let-7k, dre-mir-10a, dre-mir-10b-1, dre-mir-430b-1, hsa-mir-449a, mmu-mir-449a, dre-let-7a-1, dre-let-7a-2, dre-let-7a-3, dre-let-7a-4, dre-let-7a-5, dre-let-7a-6, dre-let-7b, dre-let-7c-1, dre-let-7c-2, dre-let-7d-1, dre-let-7d-2, dre-let-7e, dre-let-7f, dre-let-7g-1, dre-let-7g-2, dre-let-7h, dre-let-7i, dre-mir-1-2, dre-mir-1-1, dre-mir-10b-2, dre-mir-10c, dre-mir-10d, dre-mir-17a-1, dre-mir-17a-2, dre-mir-25, dre-mir-92a-1, dre-mir-92a-2, dre-mir-92b, dre-mir-124-1, dre-mir-124-2, dre-mir-124-3, dre-mir-124-4, dre-mir-124-5, dre-mir-124-6, dre-mir-430b-2, dre-mir-430b-3, dre-mir-430b-4, dre-mir-430b-6, dre-mir-430b-7, dre-mir-430b-8, dre-mir-430b-9, dre-mir-430b-10, dre-mir-430b-11, dre-mir-430b-12, dre-mir-430b-13, dre-mir-430b-14, dre-mir-430b-15, dre-mir-430b-16, dre-mir-430b-17, dre-mir-430b-18, dre-mir-430b-5, dre-mir-430b-19, dre-mir-430b-20, hsa-mir-412, hsa-mir-511, dre-let-7j, hsa-mir-92b, hsa-mir-449b, gga-mir-449a, hsa-mir-758, hsa-mir-767, hsa-mir-449c, hsa-mir-802, mmu-mir-758, mmu-mir-802, mmu-mir-449c, mmu-mir-105, mmu-mir-92b, mmu-mir-449b, mmu-mir-511, mmu-mir-1b, gga-mir-1c, gga-mir-449c, gga-mir-10a, gga-mir-449b, gga-mir-124a-2, mmu-mir-767, mmu-let-7j, mmu-let-7k, gga-mir-124c, gga-mir-92-2, gga-mir-449d, mmu-mir-124b, gga-mir-10c, gga-let-7l-1, gga-let-7l-2
The family defining bootstrap cutoff values are tree-specific, and are set to be the smallest bootstrap value of the reference miRNA families (let7, mir-124, mir-17 and mir-1, See additional file 3: Reference miRNA families) in each input tree. [score:1]
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