Stem-loop gga-mir-124a-1

Accession

MI0001197

Description

Gallus gallus gga-mir-124a-1 precursor miRNA

Literature search

26 open access papers mention gga-mir-124a-1
(76 sentences)

Sequence

507813 reads, 354.0 reads per million, 154 experiments

aggcucugccucucCGUGUUCACAGCGGACCUUGAUUuaaugucauacaaUUAAGGCACGCGGUGAAUGCCAagagcggauccuccaggcggcauu
(((.(((((.(((..((((((((.(((..((((((((...........))))))))..))).))))))))..)))))))).)))............

Structure

------------   c     c   cC        A   GA        uaau 
            agg ucugc ucu  GUGUUCAC GCG  CCUUGAUU    g
            ||| ||||| |||  |||||||| |||  ||||||||    u
            ucc aggcg aga  CGUAAGUG CGC  GGAAUUaa    c
uuacggcggacc   u     -   AC        G   AC        caua 

Annotation confidence High

Genome context

2: 114006648-114006743 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-mir-124a-1

Mature gga-miR-124a-5p

• Accession: MIMAT0026511
• Description: Gallus gallus gga-miR-124a-5p mature miRNA
• Sequence: 15 - CGUGUUCACAGCGGACCUUGAUU - 37
• Evidence: experimental ; Illumina [2]

Mature gga-miR-124a-3p

• Accession: MIMAT0001128
• Description: Gallus gallus gga-miR-124a-3p mature miRNA
• Sequence: 51 - UUAAGGCACGCGGUGAAUGCCA - 72
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45