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18 publications mentioning tae-MIR160

Open access articles that are associated with the species Triticum aestivum and mention the gene name MIR160. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 33
While 7 of the 9 known miRNAs tested (miR156, miR160, miR164, miR166a, miR167a, miR171a, miR396d) were down-regulated in root tissues, expression of miR1135 and miR5139 was comparable in root and shoot tissues. [score:6]
Auxin response factor (ARF), target of miR160, did not exhibit any significant change in expression levels in response to the abiotic stresses as well as four tissues, which is in accordance with the minor changes in the levels of miR160 (Figure 4A, 9B). [score:5]
Identification of more members of SPL, ARF and NAC family of transcription factors in wheat would help in delineating more targets of miR156, miR160 and miR164, respectively and further provide insights on their role in plant development. [score:4]
More than one member of wheat ARF and NAC family was targeted by miR160 and miR164, respectively [86]. [score:3]
We analyzed the expression pattern of 9 known miRNAs (miR156, miR160, miR164, miR166a, miR167a, miR171a, miR396d, miR1135 and miR5139) and 9 true novel miRNAs (tae_6, tae_7, tae_10, tae_15, tae_19, tae_22, tae_27, tae_44 and tae_45) (Figure 4 and Figure S2). [score:3]
miR156, miR160 and miR164 were found to target wheat homologs of A. thaliana SPL gene, ARF10 and NAC1 [16], [58], [78]– [80]. [score:3]
We further validated the target genes: SPL-like, ARF10 and NAC1 of wheat miR156, miR160 and miR164, respectively by RLM-RACE method. [score:3]
We found that miR156, miR160, miR166a, miR396d, miR1135, miR5139, tae_10, tae_15 and tae_44 exhibited approximately two-fold induction in expression levels when mannitol -induced water-deficiency stress was imposed (Figure 5A, B). [score:3]
Surprisingly, out of 18 miRNAs tested in this study, 11 miRNAs (miR156, miR160, miR166a, miR167a, miR171a, tae_6, tae_7, tae_15, tae_19, tae_27 and tae_45) exhibited contrasting expression profile in seedlings exposed to mannitol as compared with the seedlings stressed with PEG (Figure 5A, B). [score:2]
Exceptionally however, levels of miR160 increased significantly in response to application of BS. [score:1]
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2
[+] score: 33
In our study, gene ARF22 was targeted by four downregulated members of the bdi-MIR160 family (Table 1). [score:6]
Interestingly, gene ARF5 was targeted by the upregulated bdi-miR397a, instead of bdi-miR160. [score:6]
Some of these upregulated miRNAs (miR156, miR160, miR165/166, miR167, miR398, and miR168) were also reported in UV-B-stressed Arabidopsis (Zhou et al., 2007). [score:4]
For example, the two MYB genes involved in GA pathway were regulated by bdi-miR159a/b, ARF22, and ARF5 genes involved in auxin pathway were the target of bdi-miR160 and bdi-miR397a, respectively, and the E3 ubiquitin-protein ligase XBOS35 and ethylene-responsive transcription factor RAP2-3 genes related with ET signaling pathways were mediated by bdi-miR528 and novel_mir_120/novel_mir_222, respectively. [score:4]
miR160 regulates the expression of ARF genes by combining with the complementary sites of a non-coding region of ARF genes (Rhoades et al., 2002). [score:4]
The 10 downregulated known miRNAs were composed of three miRNA families, including five members of miR169, four members of miR160, and miR7770. [score:4]
For example, miR160 can be transcriptionally regulated by proteins ARF6 and ARF17 in Arabidopsis (Gutierrez et al., 2009). [score:2]
Auxin response factors (ARFs) are a class of auxin-responsive TFs mediated and regulated by miR160 (Mallory et al., 2005). [score:2]
As reported in a previous study (Li et al., 2011), a series of known H [2]O [2]-responsive miRNAs, including miR159, miR160, miR169, miR397, and miR528, were also identified in our study. [score:1]
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3
[+] score: 25
Considering that the ‘sponge’ of miR160 is highly expressed in early panicles and seeds after pollination and that the ‘sponge’ of miR164 is specifically expressed in pistil and anther, it is intriguing to associate these two lncRNAs with the functions of miR160/miR164 in regulating floral and/or seed development. [score:7]
Both XLOC_0063639 and XLOC_007072 dramatically increased the mRNA abundance of corresponding miRNA (OsmiR160 and OsmiR164) targets (LOC_Os02g36880 for miR164 [59]; LOC_Os06G47150 and LOC_Os10g33940 for miR160 [60]) in their transiently expressed protoplasts, suggesting that XLOC_0063639 and XLOC_007072 indeed inhibited the functions of OsmiR160 and miR164, respectively (Figure  6C,E-H). [score:7]
We further verify the functions of a set of lncRNAs that are preferentially expressed in reproductive stages and identify several lncRNAs as competing endogenous RNAs (ceRNAs), which sequester miR160 or miR164 in a type of target mimicry. [score:5]
After experimental verification, two of these reproduction-related lncRNAs were confirmed to be target mimics of miR160 and miR164, respectively. [score:3]
It has been reported that a decrease in miR160 causes abnormal flower morphology, reduced fertility and aberrant seeds and that miR164 plays a role in specifying particular cell types during the later stages of flower development [61- 63]. [score:2]
Interestingly, 65 of the identified rice lincRNAs were predicted to be ‘decoys’ of conserved miRNAs, such as miR160, miR164, miR168, miR169 and miR408 (Additional files 9 and 10). [score:1]
[1 to 20 of 6 sentences]
4
[+] score: 24
The conserved miRNA-target interaction previously proved to be essential for floral development in plant, like tae-miR156-SPL17, tae-miR159a-GAMYB, tae-miR160-ARF18, tae-miR164-CUC2 and tae-miR167a-ARF12, showed very little changes in expression between SL and NN plants at MMC and MP stages (Additional file  19: Figure S7). [score:6]
The relative expression of selected targets from degradome data for miR156 (SPL17), miR159 (GAMYB), miR160 (ARF18), miR164 (CUC2), miR167 (ARF12) and miR1127b (DAD1). [score:5]
c and d Screening of significant differentially expressed genes with Volcano chart by comparing SL1 and NN1, SL2 and NN2 There are several conserved miRNAs that have been reported to be essential for reproductive development in plants, including miR156/7, miR159, miR160, miR164, miR165/166, miR167, miR169, miR172, miR319 and miR396 [14]. [score:4]
No obvious expression changes of tae-miR159a, tae-miR160, tae-miR164, tae-miR167a and tae-miR167c were found between SL1 and NN1, and between SL2 and NN2 samples. [score:3]
According to previous studies, miR156, miR159, miR160, miR164, miR167, miR319, miR396 and miR5200 were mainly involved in floral development [14, 28]. [score:2]
Error bars indicated s. d. based on three biological replicates (** P < 0.01, Student’s t-test) There are several conserved miRNAs that have been reported to be essential for reproductive development in plants, including miR156/7, miR159, miR160, miR164, miR165/166, miR167, miR169, miR172, miR319 and miR396 [14]. [score:2]
Some conserved and classical miRNAs such as, miR156, miR159, miR160, miR164, miR167, miR396, miR5200, etc. [score:1]
In this study, miR156, miR159, miR160, miR164, miR167, miR319 and miR396 were identified from our data. [score:1]
[1 to 20 of 8 sentences]
5
[+] score: 21
Other miRNAs from this paper: osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR164a, osa-MIR164b, osa-MIR166a, osa-MIR166b, osa-MIR166c, osa-MIR166d, osa-MIR166e, osa-MIR166f, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR396a, osa-MIR396b, osa-MIR396c, osa-MIR397a, osa-MIR397b, osa-MIR398a, osa-MIR398b, osa-MIR156k, osa-MIR156l, osa-MIR159a, osa-MIR159b, osa-MIR159c, osa-MIR159d, osa-MIR159e, osa-MIR159f, osa-MIR160e, osa-MIR160f, osa-MIR164c, osa-MIR164d, osa-MIR164e, osa-MIR166k, osa-MIR166l, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR168a, osa-MIR168b, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR171b, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR166g, osa-MIR166h, osa-MIR166i, osa-MIR172d, osa-MIR167j, osa-MIR166m, osa-MIR166j, osa-MIR164f, zma-MIR156d, zma-MIR156f, zma-MIR156g, zma-MIR156b, zma-MIR156c, zma-MIR156e, zma-MIR156a, zma-MIR156h, zma-MIR156i, zma-MIR160a, zma-MIR160c, zma-MIR160d, zma-MIR160b, zma-MIR164a, zma-MIR164d, zma-MIR164b, zma-MIR164c, zma-MIR169a, zma-MIR169b, zma-MIR167a, zma-MIR167b, zma-MIR167d, zma-MIR167c, zma-MIR160e, zma-MIR166a, zma-MIR166h, zma-MIR166e, zma-MIR166i, zma-MIR166f, zma-MIR166g, zma-MIR166b, zma-MIR166c, zma-MIR166d, zma-MIR171b, zma-MIR172a, zma-MIR172d, zma-MIR172b, zma-MIR172c, osa-MIR396e, zma-MIR396b, zma-MIR396a, zma-MIR156j, zma-MIR159a, zma-MIR159b, zma-MIR159c, zma-MIR159d, zma-MIR166k, zma-MIR166j, zma-MIR167e, zma-MIR167f, zma-MIR167g, zma-MIR167h, zma-MIR167i, zma-MIR168a, zma-MIR168b, zma-MIR169c, zma-MIR169f, zma-MIR169g, zma-MIR169h, zma-MIR169i, zma-MIR169k, zma-MIR169j, zma-MIR169d, zma-MIR169e, zma-MIR172e, zma-MIR166l, zma-MIR166m, zma-MIR156k, zma-MIR160f, tae-MIR159a, tae-MIR159b, tae-MIR164, tae-MIR167a, tae-MIR1127a, osa-MIR169r, osa-MIR396f, zma-MIR396c, zma-MIR396d, osa-MIR2275a, osa-MIR2275b, zma-MIR2275a, zma-MIR2275b, zma-MIR2275c, zma-MIR2275d, osa-MIR396g, osa-MIR396h, osa-MIR396d, zma-MIR156l, zma-MIR159e, zma-MIR159f, zma-MIR159g, zma-MIR159h, zma-MIR159i, zma-MIR159j, zma-MIR159k, zma-MIR160g, zma-MIR164e, zma-MIR164f, zma-MIR164g, zma-MIR164h, zma-MIR166n, zma-MIR167j, zma-MIR169l, zma-MIR169m, zma-MIR169n, zma-MIR169o, zma-MIR169p, zma-MIR169q, zma-MIR169r, zma-MIR396e, zma-MIR396f, zma-MIR396g, zma-MIR396h, zma-MIR397a, zma-MIR397b, zma-MIR398a, zma-MIR398b, hvu-MIR156a, tae-MIR156, hvu-MIR159b, hvu-MIR159a, hvu-MIR166a, tae-MIR167b, hvu-MIR168, hvu-MIR169, tae-MIR169, hvu-MIR397a, tae-MIR398, tae-MIR171b, hvu-MIR166b, hvu-MIR166c, osa-MIR2275c, osa-MIR2275d, tae-MIR1122b, tae-MIR9653a, tae-MIR9654a, tae-MIR9656, tae-MIR9657a, tae-MIR9659, tae-MIR9660, tae-MIR1127b, tae-MIR9661, tae-MIR396, tae-MIR9665, tae-MIR2275, tae-MIR9667, tae-MIR167c, tae-MIR1120b, tae-MIR397, tae-MIR1130b, tae-MIR5384, tae-MIR9675, tae-MIR1120c, tae-MIR9679, tae-MIR9657b, hvu-MIR397b, hvu-MIR156b, tae-MIR9653b
miR160 and miR164 targeted Auxin response factor (ARF) and NAC transcription factor (NAC), respectively (Additional file 11), which control key steps in plant development. [score:4]
Of the 15 known miRNA families, 4 (miR169, miR166, miR164 and miR160) were preferentially expressed in the developing seeds (with the logarithm of the fold changes of 0.3 ~ 3.0 in the developing seeds, more than those in the flag leaves) (Figure  3a, Table  2). [score:3]
Four of the 15 known miRNA families, including miR169, miR166, miR164 and miR160 were preferentially expressed in the developing seeds with the logarithm of the fold changes of 0.3 ~ 3.0. [score:3]
Plants expressing the miR160-resistant auxin response factor 17 (ARF17) may cause abnormal embryo symmetry [18]. [score:3]
Plants expressing the miR160-resistant ARF17 may cause abnormal embryo symmetry [18]. [score:3]
From 5 days post-anthesis to 20 days post-anthesis, miR164 and miR160 increased in abundance in the developing seeds, whereas miR169 decreased, suggesting their coordinating functions in the different developmental stages of wheat seed. [score:2]
From 5 days post-anthesis to 20 days post-anthesis, miR164 and miR160 increased in abundance, whereas miR169 decreased, suggesting that these miRNAs have coordinating functions in the different developmental stages of wheat seed. [score:2]
From 5 DPA to 20 DPA, miR164 and miR160 increased in abundance, whereas miR169 decreased (Figure  3a, Table  2). [score:1]
[1 to 20 of 8 sentences]
6
[+] score: 21
MiR160 was up-regulated and miR167 down-regulated in this study, which is similar to their expression profiles in Medicago in response to cold and freezing stresses [45]. [score:9]
Both miR160 and miR167 targets auxin-response factors (ARFs), but they displayed opposite expression patterns. [score:5]
Moreover, as shown in Table  2, a significant number of transcripts detected by degradome sequencing have been reported previously such as miR156- SBP, miR172- AP2, miR160- ARF (Auxin Response Factor), miR169-NFYA (Nuclear transcription Factor Y subunit A), miR319- TCP, and MiR9863- NBS, indicating conserved miRNA-target interaction in plants. [score:3]
In wheat, for example, miR160 and miR167 are involved in the response to multiple biotic and abiotic stresses [27, 28, 31, 32, 34, 65]. [score:1]
Tritici in wheat [43], while miR160 were responsive to the Magnaporthe oryzae infection in rice [11]. [score:1]
MiR169, miR172, miR156, miR319, miR159, and miR396 showed the cold-stress response in at least three species, and miR160, miR165, miR167, and miR171 overlapped with Populus, Arabidopsis, and Medicago (Additional file 1: Table S6). [score:1]
For the nutrient stresses, miR160 had a role in the N homeostasis [9], and miR167 was observed to responsive to Pi deprivation in wheat [9]. [score:1]
[1 to 20 of 7 sentences]
7
[+] score: 15
The suppressed expression of miR160 and miR164 probably results with the induction of heat shock protein expression and supports the maintenance of vitality under high temperatures. [score:7]
The targeting of several Auxin response factors by miR167 and miR160, HD-ZIP transcription factors by miR166, NAC family transcription factors by miR164, and MYB family transcription factors by miR159 in soybean (Song et al. 2011) and the miR824 targeting of MADS box genes were recently shown to be involved in drought stress responses in Brachypodium and rice, and all provide examples of how this mechanism can mediate responses to numerous abiotic stresses (Arora et al. 2007; Kutter et al. 2007; Wei et al. 2014a). [score:5]
They observed that miR159, miR160, miR164, miR399, miR1117, and miR1120 exhibited differential expression suggesting a role in N homeostasis (Sinha et al. 2015) (Table 3). [score:3]
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8
[+] score: 12
In addition, Arabidopsis miRNAs including miR160, miR166, and miR319 inhibit the expression of differentiation-promoting transcription factors such as ARF17, CNA, PHB, PHV, and TCP4 to enable proper embryonic patterning [66]. [score:5]
We employed a gene-specific 5′-rapid amplification of cDNA ends (RACE) assay to isolate cleavage remnants for 15 target genes, including 2 SPL genes for miR156, 1 ARF gene for miR160, 2 NAC genes for miR164, 2 HOMEOBOX-LEUCINE ZIPPER genes for miR166, 5 genes encoding nuclear transcription factor Y subunit A proteins for miR169, 1 scarecrow-like protein gene for miR171 and 1 AP2 gene for miR172, and 1 gene encoding a C3HC4 type zinc finger protein that was regulated by miR444 in wheat. [score:3]
For instance, in addition to auxin response factors, miR160 was found to target two unigenes encoding FIZZY-RELATED 2-like proteins. [score:3]
Moreover, we also identified 30 wheat-specific variants from 9 highly conserved miRNA families, including miR159, miR160, miR167, miR169, miR171, miR172, miR393, miR396 and miR398 families (Additional file 3: Table S3). [score:1]
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9
[+] score: 10
For example, miR172 was significantly decreased with 1.5 fold changes, and 8 miRNAs, including miR156, miR159, miR160, miR166, miR168, miR169, miR827, and miR2005, were up-regulated with the highest expression change of 2.9 fold for miR168. [score:6]
Previous studies revealed that miR160, miR166, miR167 and miR393 may involve in auxin signaling pathway by regulating different transcription factors. [score:2]
fusiforme [32], and miR156, miR164 and miR160 were induced in tobacco after plant virus's infection [51]. [score:1]
For example, miR156 and miR160 were significantly repressed in the galled loblolly pine stem infected with the fungus C. quercuum f. sp. [score:1]
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10
[+] score: 10
MiR160 targeted stress responsive genes such as auxin response factors and drought-responsive factors, while MiR167 and miR396 are known to target signal transducers and nutrient reservoir activity, respectively. [score:5]
Inspite of differences between our studies in terms of genotypes (Glenlea vs HD2985), duration of heat stress exposure (5 days vs 2 hours), stage of sampling (boot stage vs seedling), nature of samples (leaf vs mixed), precursor evidence (~98,000 from the IWGSC draft assembly vs wheat ESTs) and method of differential expression analysis (edgeR vs log2 ratio), five major miRNA families (miR156, miR159, miR160, miR167 and miR398) associated with proteins of known heat signaling pathways were differentially expressed in both studies. [score:5]
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11
[+] score: 9
Many ARF members are known to be regulated by miR167 and miR160 and to play regulatory roles in adventitious rooting [58], supporting the possible role of apMir_22246 in root development under Al treatment. [score:4]
In addition, the experimentally validated apMir_22246 (which corresponds to tae-miR160) is regulated by Al exposure (Figure  3c) and targets specifically ARFs. [score:4]
For instance, apMir_22246 corresponding to miR160 with perfect match in wheat and moss Physcomitrella patens (ppt-miR160) is highly expressed in our investigated conditions indicating that this miRNA may play common biological functions in plants kingdom. [score:1]
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12
[+] score: 7
Other miRNAs from this paper: tae-MIR156
Significantly, several genes involved in the biogenesis of siRNA and miRNA, including Dicer homolog, AGO1, piwi, and dsRNA -binding proteins, were also regulated by heat stress, Several microRNA (miRNA) target genes, such as SPL2 (miR156) [55] and ARF16 (miR160) [56], were down-regulated, suggesting a role of miRNAs in heat response pathway in plants. [score:7]
[1 to 20 of 1 sentences]
13
[+] score: 6
Other miRNAs from this paper: osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR395b, osa-MIR395d, osa-MIR395e, osa-MIR395g, osa-MIR395h, osa-MIR395i, osa-MIR395j, osa-MIR395k, osa-MIR395l, osa-MIR395s, osa-MIR395t, osa-MIR395c, osa-MIR395a, osa-MIR395f, osa-MIR395u, osa-MIR398a, osa-MIR398b, osa-MIR160e, osa-MIR160f, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR167j, osa-MIR437, osa-MIR395m, osa-MIR395n, osa-MIR395o, osa-MIR395p, osa-MIR395q, osa-MIR395v, osa-MIR395w, osa-MIR395r, osa-MIR818a, osa-MIR818b, osa-MIR818c, osa-MIR818d, osa-MIR818e, tae-MIR167a, tae-MIR1117, tae-MIR1118, tae-MIR1120a, tae-MIR1122a, tae-MIR1125, tae-MIR1127a, tae-MIR1128, tae-MIR1131, tae-MIR1133, tae-MIR1135, tae-MIR1136, tae-MIR1139, osa-MIR169r, osa-MIR1436, osa-MIR1439, osa-MIR2118a, osa-MIR2118b, osa-MIR2118c, osa-MIR2118d, osa-MIR2118e, osa-MIR2118f, osa-MIR2118g, osa-MIR2118h, osa-MIR2118i, osa-MIR2118j, osa-MIR2118k, osa-MIR2118l, osa-MIR2118m, osa-MIR2118n, osa-MIR2118o, osa-MIR2118p, osa-MIR2118q, osa-MIR2118r, bdi-MIR167a, bdi-MIR1139, bdi-MIR1122, bdi-MIR437, bdi-MIR169b, bdi-MIR1127, bdi-MIR1135, osa-MIR395x, osa-MIR395y, tae-MIR167b, tae-MIR169, tae-MIR395a, tae-MIR395b, tae-MIR398, tae-MIR5085, bdi-MIR5070, bdi-MIR169d, bdi-MIR169i, bdi-MIR395a, bdi-MIR169j, bdi-MIR160a, bdi-MIR395b, bdi-MIR167b, bdi-MIR160b, bdi-MIR167c, bdi-MIR169k, bdi-MIR160c, bdi-MIR167d, bdi-MIR169g, bdi-MIR160d, bdi-MIR160e, bdi-MIR169e, bdi-MIR398a, bdi-MIR169a, bdi-MIR169h, bdi-MIR169c, bdi-MIR395c, bdi-MIR5180b, bdi-MIR5175a, bdi-MIR5175b, bdi-MIR395d, bdi-MIR398b, bdi-MIR5180a, bdi-MIR169f, bdi-MIR395m, bdi-MIR395e, bdi-MIR395f, bdi-MIR395g, bdi-MIR395h, bdi-MIR395j, bdi-MIR395k, bdi-MIR395l, bdi-MIR395n, osa-MIR818f, bdi-MIR167e, bdi-MIR395o, bdi-MIR395p, bdi-MIR5049, bdi-MIR160f, bdi-MIR167f, bdi-MIR167g, bdi-MIR169l, bdi-MIR169m, bdi-MIR169n, bdi-MIR395q, bdi-MIR2118a, bdi-MIR2118b, tae-MIR1122b, tae-MIR1127b, tae-MIR1122c, tae-MIR167c, tae-MIR5175, tae-MIR1120b, tae-MIR1120c, tae-MIR6197, tae-MIR5049
miRNA Name Species of target was identified Experimentally conformed target miR167 ath/osa Auxin response factors miR395 ath/osa ATP sulphurylase miR160 ath/osa Auxin response factors ath-Arabidopsis thaliana; osa-Oryza sativa. [score:5]
Independent studies in different plant species including A. thaliana, O. sativa,and Populus trichocarpashowed drought stress responsiveness of miR160,miR167, miR169, miR1125, and miR398, which were also found in wheat chromosome 5D [55]– [57]. [score:1]
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14
[+] score: 5
Other miRNAs from this paper: osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR164a, osa-MIR164b, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR171a, osa-MIR393a, osa-MIR396a, osa-MIR396b, osa-MIR396c, osa-MIR397a, osa-MIR397b, osa-MIR399a, osa-MIR399b, osa-MIR399c, osa-MIR399d, osa-MIR399e, osa-MIR399f, osa-MIR399g, osa-MIR399h, osa-MIR399i, osa-MIR399j, osa-MIR399k, osa-MIR156k, osa-MIR156l, osa-MIR159a, osa-MIR159b, osa-MIR159c, osa-MIR159d, osa-MIR159e, osa-MIR159f, osa-MIR319a, osa-MIR319b, osa-MIR160e, osa-MIR160f, osa-MIR164c, osa-MIR164d, osa-MIR164e, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR168a, osa-MIR168b, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR171b, osa-MIR171c, osa-MIR171d, osa-MIR171e, osa-MIR171f, osa-MIR171g, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR171h, osa-MIR393b, osa-MIR408, osa-MIR172d, osa-MIR171i, osa-MIR167j, osa-MIR164f, osa-MIR390, osa-MIR439a, osa-MIR439b, osa-MIR439c, osa-MIR439d, osa-MIR439e, osa-MIR439f, osa-MIR439g, osa-MIR439h, osa-MIR439i, osa-MIR396e, osa-MIR444a, tae-MIR159a, tae-MIR159b, tae-MIR164, tae-MIR167a, tae-MIR171a, tae-MIR399, tae-MIR408, tae-MIR444a, osa-MIR169r, osa-MIR444b, osa-MIR444c, osa-MIR444d, osa-MIR444e, osa-MIR444f, osa-MIR396f, osa-MIR396g, osa-MIR396h, osa-MIR396d, tae-MIR156, tae-MIR319, tae-MIR167b, tae-MIR169, tae-MIR444b, tae-MIR171b, tae-MIR396, tae-MIR167c, tae-MIR397
Twelve conserved miRNA families (miR156/157, miR159/319, miR160, miR164, miR165/166, miR167, miR169, miR170/171, miR172 and miR444) have been predicted to target 24 transcription factors, including squamosa promoter binding proteins, MYB, NAC1, homeodomain-leucine zipper protein, auxin response factor, CCAAT -binding protein, scarecrow-like protein, APETELA2 protein and MADS box protein (Additional data file 2). [score:3]
This analysis revealed perfect matching of nine miRNA families, miR159, miR160, miR164, miR167, miR169, miR170, miR399, miR408 and miR444, to 14 ESTs. [score:1]
These include miRNA156/157, miR159, miR160, miR164, miR165/166, miR167, miR168, miR169, miR170/171, miR172, miR319, miR390, miR393, miR396, miR397, miR399 and miR408, which are conserved in diverse plant species (Table 2). [score:1]
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15
[+] score: 4
With the development of high-throughput sequencing and advancement in knowledge regarding miRNA functions in plants, studies have revealed that many miRNAs, such as miR156, miR159, miR160, miR162, miR171, and miR172, are conserved and universally expressed among various angiosperms. [score:4]
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[+] score: 3
Gene expression proved that they are implicated in Xingzi 9104 responding to stripe rust pathogene CYR 32, such as miR156, miR160, miR164, miR167, miR393, miR398, miR829, etc [33], while Xin et al substantiated that some of them are involved in powdery mildew stress [34]. [score:3]
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17
[+] score: 2
A series of previously reported salinity-responsive miRNAs including miR160, miR169, miR171 were also identified in our study. [score:1]
miR156, miR169, miR160, miR159, miR168, miR171, miR172, miR393 and miR396 were the most well-known salinity stress responsive miRNAs in plants summarized from previous studies in maize [18], rice [17], wheat [20, 39], barley [7] and sugarcane [40]. [score:1]
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[+] score: 1
Six miRNA families, osa-miR159, osa-miR160, osamiR164, osa-miR167, osa-miR172, and osa-miR1848, were shown to be associated with the rice leaf senescence processes through hormone signaling pathways. [score:1]
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