Stem-loop tae-MIR160

Accession

MI0006172

Description

Triticum aestivum tae-MIR160 precursor miRNA

Literature search

24 open access papers mention tae-MIR160
(87 sentences)

Sequence

378536 reads, 2854.0 reads per million, 234 experiments

agaggugaaaacaaugggauaUGCCUGGCUCCCUGUAUGCCAcucgcguagcugccaacuccccaaaccuugcguuggcucuaccgcggaugGCGUGCGAGGAGCCAAGCAUGAccgucucucucucucucucucucucucucucuc
(((((.((.....((((..(((((.(((((((.(((((((((.((((((((..((((((..............)))))).))).))))).))))))))).))))))).))))).)))).....))))))).................

Structure

-----------------     u  aaaca    ga     C       C         c     -   cu      ucccca 
                 agagg ga     augg  uaUGC UGGCUCC UGUAUGCCA ucgcg uag  gccaac      a
                 ||||| ||     ||||  ||||| ||||||| ||||||||| ||||| |||  ||||||       
                 ucucu cu     ugcc  GUACG ACCGAGG GCGUGCGgu ggcgc auc  cgguug      a
cucucucucucucucuc     -  cucuc    -A     A       A         a     c   -u      cguucc 

Annotation confidence High

Genome context

5B: 233412448-233412594 [+]

Mature tae-miR160-5p

• Accession: MIMAT0005345
• Description: Triticum aestivum tae-miR160-5p mature miRNA
• Sequence: 22 - UGCCUGGCUCCCUGUAUGCCA - 42
• Evidence: experimental ; cloned [1]

Mature tae-miR160-3p

• Accession: MIMAT0056473
• Description: Triticum aestivum tae-miR160-3p mature miRNA
• Sequence: 93 - GCGUGCGAGGAGCCAAGCAUGA - 114
• Evidence: experimental ; unknown

References

1. PubMed ID: 17543110
   Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
   Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
   Genome Biol (2007) 8:R96