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19 publications mentioning tae-MIR171a

Open access articles that are associated with the species Triticum aestivum and mention the gene name MIR171a. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 85
Tae-miR156 targets the SBP (SQUAMOSA-promoter binding protein) domain (Traes_2BS_186EA570A), miR164 targets the CUP-SHAPED COTYLEDON (CUC)/ NO APICAL MERISTEM (NAM) gene family (Traes_2BL_6AEE8AC28.1), miR159 targets a myeloblastosis (MYB) transcription factor (Traes_1AL_041EBB4A6.2), tae-miR171a targets the SCL (Scarecrow-like) gene (Traes_6DL_26DDCA106.1), tae-aly-miR825-5p targets the CaBP gene (Ca [2+] binding transmembrane protein) (Traes_1DL_F77022E34.2), tae-aly-miRNA398a-5p and tae-blo-miRNA398a-5p may target the EXPB gene (expansin precursor protein) (Traes_1AL_DB4D32ABB. [score:13]
Furthermore, there are consistent negative relationships between expression of tae-miR171a and its target in different developmental stages, suggesting that tae-miR171a is a negative regulator in post-transcriptional gene silencing through base pairing with target mRNAs, which leads to mRNA cleavage or translational repression. [score:11]
Recently, studies reported that miR171 and miR167 showed diurnal oscillation expression during the day: up-regulated in the light and down-regulated in darkness (Siré et al., 2009). [score:9]
To examine the functional relationship between the targets and their corresponding miRNAs, 9 known miRNAs (tae-miRNA156, tae-miRNA171, tae-miRNA159, tae-miRNA172, tae-blo-miRNA398, tae-miRNA164, tae-miRNA825, miRNA1120, and miRNA1130) and 2 novel miRNAs (novel-miR-964 and novel-miR-2186) and expression of their targets were examined by qRT-PCR to analyze their principle regulation during male fertility transition (Figure 6). [score:8]
miR172, miR156, and miR171 interact with their respective target genes (AP2, SPL, and SCL), participating in the GA/abscisic acid (ABA) signaling pathway and GA/auxin signaling pathway to regulate flowering time; miR825, miR167, and miR1120/miR1130 interact with their respective target genes (CaBP, ARF, and LRR), participating in the CRY/PHY signaling pathway, auxin signaling pathway and JA signaling pathway, to modulate pollen development. [score:7]
In this study, tae-miR171a and tae-miR167a show differential expression between FS and SS at different developmental stages (Table 4), as well as their targets (Traes_6DL_26DDCA106.1 for tae-miR171a; Traes_2AL_A7941CB12.2 and Traes_2BL_B2D711406.2 for tae-miR167a) (Table S5). [score:6]
Another study showed that blue light alters miR167 expression and microRNA -targeted auxin response factor genes in Arabidopsis thaliana suggesting that miR171 and miR167 may be regulated by light or the circadian clock. [score:6]
Among these targets, the targets of miR156, miR164, and tae-miR171a were predicted, and the others were confirmed using degradation sequencing. [score:5]
Moreover, miR171 target protein LiSCL (L. longiflorum Scarecrow-like), also called GRAS, is expressed specifically at the premeiotic phase within anthers (Morohashi et al., 2003). [score:5]
Arabidopsis miR171 -targeted scarecrow-like proteins bind to GT cis-elements and mediate gibberellin-regulated chlorophyll biosynthesis under light conditions. [score:4]
For example, tae-miR171a showed differential expression in FS1/SS1 and FS2/SS2, not in FS3/SS3. [score:3]
The Arabidopsis miR171 family with their targets are involved in shoot branching (Wang et al., 2010; Manavella et al., 2013) and gibberellin (GA) -DELLA signaling -mediated chlorophyll biosynthesis (Ma et al., 2014). [score:3]
In this mo del, miR825, miR172, miR156, and miR171 are mainly regulated by light, whereas miR1130/miR1120, miR398, miR159, miR164, and two novel-miRNAs (novel-miR964 and novel-miR2186) may be regulated by light. [score:3]
Tissue-specific silencing of Arabidopsis SU (VAR) 3-9 HOMOLOG8 by miR171a. [score:1]
Diurnal oscillation in the accumulation of Arabidopsis microRNAs, miR167, miR168, miR171 and miR398. [score:1]
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2
[+] score: 37
In their study, they found that the expression of miR164, miR395, and miR156 was downregulated while miR159, miR167, and miR171 expression was upregulated in leaf tissues of wheat. [score:11]
The expression of miR171 targeting the Scarecrow-like transcription factor like (SCL-6) (Table 1) was found to be upregulated during drought stress in the leaves of barley while no change was detected in the root expression pattern for the same miRNA (Kantar et al. 2010). [score:10]
Interestingly, miR171 which targets the MYB family of transcription factors was found to be upregulated by salinity stress in both wheat and barley (Wang et al. 2014; Deng et al. 2015) (Table 2). [score:6]
Different tissue types may exhibit tissue-specific miRNA variation in the expression as is the case of miR171 from barley. [score:3]
Also, many miRNA families such as miR171 and miR393 showed induced expression in wheat in response to salinity stress (Gupta et al. 2014; Wang et al. 2014). [score:3]
Since both drought and salt stresses effect the osmotic balance of plant cells, miR171 might play a role in the regulation of the osmotic balance under such stress conditions. [score:2]
The manipulation of miR171 under salinity and drought stresses may provide improved osmotic protection to members of the Triticeae. [score:1]
durum, T. aestivum –Liu et al. 2015a, Ma et al. 2015, Akpinar and Budak 2016 miR168 T. aestivum –Gupta et al. 2014, Ma et al. 2015 miR169 H. vulgare –Hackenberg et al. 2014 miR171 T. turgidum ssp. [score:1]
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3
[+] score: 33
All the seven miRNAs a showed relatively lower expression level at 6 h and the highest expression level at 12 h, except for miR171a and miRN25 which showed the highest expression level at 24 h. While under the 250 mM condition, six of the seven miRNAs shared a similar expression pattern, except for miRN92. [score:9]
miR171 targets the myeloblastosis (MYB) family of transcription factors, which might play a role in the regulation of osmotic balance under both salinity and drought stress. [score:4]
miR171 and miR393 were found to be up-regulated under salinity stress in wheat, barley [7] and Arabidopsis [49, 50]. [score:4]
miRNAs generally showed higher expression levels in A9 than B5, and miR166b, miR171a, and miRN25 were even shown several or dozens of times (Figure 3 and Figure 4). [score:3]
Many miRNA families, such as Tae-miR171, Tae-miR393, and Tae-miR855, as well as Tae-miR408, were reported to have induced expression under salinity stress in wheat [20, 21]. [score:3]
Although different plant species may cope with stress using different miRNA -mediated regulatory strategies [42], some reported hub miRNAs, such as miR171, miR169, miR393 miR396, miR398 and miR1120, etc. [score:2]
In wild emmer, miR166, miR171, miR398, miR396 and miR1432 were also identified as responsive to drought [22] (Table 4), which indicated these miRNAs might play key roles in both salt or drought stress -regulating pathways in wild emmer wheat. [score:2]
In our results, each of the two miRNAs belonging to the miR393 and miR171 families showed up -expression under salinity stress, especially miR393a and miR393b, about 10 times higher compared to control. [score:2]
A series of previously reported salinity-responsive miRNAs including miR160, miR169, miR171 were also identified in our study. [score:1]
Three highly conserved (miR166b, miR171a and miR393a) and four novel (miRN25, miRN38, miRN41 and miRN92) salinity stress-responsive miRNAs were analyzed. [score:1]
miR156, miR169, miR160, miR159, miR168, miR171, miR172, miR393 and miR396 were the most well-known salinity stress responsive miRNAs in plants summarized from previous studies in maize [18], rice [17], wheat [20, 39], barley [7] and sugarcane [40]. [score:1]
miRNAs such as miR156, miR171 and miR396 etc. [score:1]
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4
[+] score: 24
A unique set of miRNAs expressed or differentially expressed in embryogenic callus were identified in rice (Luo et al., 2006; Chen et al., 2014); miRNAs and their target genes were analyzed in cotton (Gossypium hirsutum L. ) revealing their regulation role during somatic embryogenesis (Yang et al., 2013), miRNA expression during somatic embryogenesis in citrus (Citrus sinensis L. ) shows that miR156, miR168, and miR171 as well as miR159, miR164, miR390, and miR397 are related to somatic embryo induction or formation (Wu et al., 2011). [score:10]
Stage-specific expression of miRNAs and their targets in larch (Larix leptolepis Gordon) indicate that miR171a/b might exert function on proembryogenic masses, miR171c acts in the induction process; miR162 and miR168 exert their regulatory function during total somatic embryogenesis process (Zhang et al., 2012). [score:6]
For example, four abiotic stress -induced miRNA families, miR159, miR169, miR171, and miR172, are all target transcription factors involved in the regulation of gene function in cell differentiation and development in larch (Zhang et al., 2010). [score:5]
The majority of abundantly expressed miRNAs were known miRNAs from the miRBase of wheat or they were deeply conserved families such as miR156, miR159, and miR171. [score:3]
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5
[+] score: 18
Similarly, six miRNAs were identified as UV-B-responsive miRNAs in wheat (Wang et al., 2013), in which miR159, miR167a, and miR171 are upregulated and miR156, miR164, miR395 are downregulated. [score:7]
Although we did not identify the target genes of this potential novel bdiMIR171 gene family member, a previous study in potato showed that GRAS family TF, involved in development and stress responses, such as drought stress (Ma et al., 2010), is the putative target gene of miR171 (Hwang et al., 2011). [score:6]
miR171 is also significantly downregulated under drought stress in rice and potato (Zhou et al., 2010; Hwang et al., 2011). [score:4]
miR171 family members are involved in drought response in Solanum tuberosum. [score:1]
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6
[+] score: 12
While 7 of the 9 known miRNAs tested (miR156, miR160, miR164, miR166a, miR167a, miR171a, miR396d) were down-regulated in root tissues, expression of miR1135 and miR5139 was comparable in root and shoot tissues. [score:6]
We analyzed the expression pattern of 9 known miRNAs (miR156, miR160, miR164, miR166a, miR167a, miR171a, miR396d, miR1135 and miR5139) and 9 true novel miRNAs (tae_6, tae_7, tae_10, tae_15, tae_19, tae_22, tae_27, tae_44 and tae_45) (Figure 4 and Figure S2). [score:3]
Surprisingly, out of 18 miRNAs tested in this study, 11 miRNAs (miR156, miR160, miR166a, miR167a, miR171a, tae_6, tae_7, tae_15, tae_19, tae_27 and tae_45) exhibited contrasting expression profile in seedlings exposed to mannitol as compared with the seedlings stressed with PEG (Figure 5A, B). [score:2]
These 47 known miRNA sequences exhibited canonical hairpin loop structure and out of these only 8 miRNAs, namely miR156i-5p, miR164d, miR167, miR169, miR171, miR396a, miR396d and miR1432, were found to possess corresponding star sequences (also known as ‘3p sequence’) in the wheat putative sRNA population (Table S1 in File S1). [score:1]
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7
[+] score: 9
Some of the conserved miRNAs differentially expressed in response to powdery mildew infection in wheat such as miR156, miR159, miR164, miR171, and miR396 were downregulated whereas miR393, miR444, and miR827 were upregulated, respectively [16]. [score:9]
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8
[+] score: 8
Other miRNAs from this paper: osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR164a, osa-MIR164b, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR171a, osa-MIR393a, osa-MIR396a, osa-MIR396b, osa-MIR396c, osa-MIR397a, osa-MIR397b, osa-MIR399a, osa-MIR399b, osa-MIR399c, osa-MIR399d, osa-MIR399e, osa-MIR399f, osa-MIR399g, osa-MIR399h, osa-MIR399i, osa-MIR399j, osa-MIR399k, osa-MIR156k, osa-MIR156l, osa-MIR159a, osa-MIR159b, osa-MIR159c, osa-MIR159d, osa-MIR159e, osa-MIR159f, osa-MIR319a, osa-MIR319b, osa-MIR160e, osa-MIR160f, osa-MIR164c, osa-MIR164d, osa-MIR164e, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR168a, osa-MIR168b, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR171b, osa-MIR171c, osa-MIR171d, osa-MIR171e, osa-MIR171f, osa-MIR171g, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR171h, osa-MIR393b, osa-MIR408, osa-MIR172d, osa-MIR171i, osa-MIR167j, osa-MIR164f, osa-MIR390, osa-MIR439a, osa-MIR439b, osa-MIR439c, osa-MIR439d, osa-MIR439e, osa-MIR439f, osa-MIR439g, osa-MIR439h, osa-MIR439i, osa-MIR396e, osa-MIR444a, tae-MIR159a, tae-MIR159b, tae-MIR160, tae-MIR164, tae-MIR167a, tae-MIR399, tae-MIR408, tae-MIR444a, osa-MIR169r, osa-MIR444b, osa-MIR444c, osa-MIR444d, osa-MIR444e, osa-MIR444f, osa-MIR396f, osa-MIR396g, osa-MIR396h, osa-MIR396d, tae-MIR156, tae-MIR319, tae-MIR167b, tae-MIR169, tae-MIR444b, tae-MIR171b, tae-MIR396, tae-MIR167c, tae-MIR397
MiR171 showed ubiquitous expression in all tissues, although the expression in roots was relatively higher (Figure 5). [score:4]
The expression patterns of miR156, miR159, miR164, and miR171, which are conserved miRNAs, were examined by (Figure 5). [score:3]
Furthermore, our analysis revealed that the library included all known members of several miRNA families: miR156, miR159, miR167, miR169, miR168, miR171 and miR172. [score:1]
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9
[+] score: 8
On the other hand, miR166 exhibits decreased expression in T. dicoccoides under drought which targets HD-ZIP3 TF and plays role in developmental while miR171 targets GRAS TF and is significant in abiotic stress responses (Kantar et al., 2011b). [score:8]
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10
[+] score: 7
For 13 highly conserved miRNA families differentially expressed in wheat grain development (Fig 3), five (miR165/166, miR171, miR393, miR396 and miR444), three (miR156, miR164 and miR168), two (miR319 and miR827), one (miR408) and two miRNAs (miR159 and miR167) belonged to Group I, II, III, IV and V, respectively. [score:4]
Most verified targets/miRNA modules were highly conserved among monocots and dicots, such as SPLs/miR156, NACs/miR164, HOXs/miR166, ARFs/miR167, SCL1/miR171, TCPs/miR319, GRFs/miR396, SPX/miR827 (Fig 4A). [score:3]
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11
[+] score: 5
By this criterion 8 pre-miRNAs were shown to be expressed – for miR171a, miR393a, miR399b (two different pre-miRNAs), miR5050 (2 different pre-miRNAs), miR5075 and miR5200, demonstrating that these miRNAs are expressed from chromosome 1AL (Table 1). [score:5]
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12
[+] score: 5
For example, miR156, miR169, miR171a, miR444c, miR827, and miR5048a were identified by sequencing as down-regulated. [score:4]
MiR169, miR172, miR156, miR319, miR159, and miR396 showed the cold-stress response in at least three species, and miR160, miR165, miR167, and miR171 overlapped with Populus, Arabidopsis, and Medicago (Additional file 1: Table S6). [score:1]
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13
[+] score: 4
With the development of high-throughput sequencing and advancement in knowledge regarding miRNA functions in plants, studies have revealed that many miRNAs, such as miR156, miR159, miR160, miR162, miR171, and miR172, are conserved and universally expressed among various angiosperms. [score:4]
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14
[+] score: 4
Similarly, the expression levels of miR156, miR159, miR164, miR167a, miR171, miR395 and miR6000 have been shown to be altered in wheat under UV-B stress [13]. [score:3]
In Arabidopsis, miR167, miR168, miR171, and miR396 are shown to be drought responsive [17]. [score:1]
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15
[+] score: 4
We employed a gene-specific 5′-rapid amplification of cDNA ends (RACE) assay to isolate cleavage remnants for 15 target genes, including 2 SPL genes for miR156, 1 ARF gene for miR160, 2 NAC genes for miR164, 2 HOMEOBOX-LEUCINE ZIPPER genes for miR166, 5 genes encoding nuclear transcription factor Y subunit A proteins for miR169, 1 scarecrow-like protein gene for miR171 and 1 AP2 gene for miR172, and 1 gene encoding a C3HC4 type zinc finger protein that was regulated by miR444 in wheat. [score:3]
Moreover, we also identified 30 wheat-specific variants from 9 highly conserved miRNA families, including miR159, miR160, miR167, miR169, miR171, miR172, miR393, miR396 and miR398 families (Additional file 3: Table S3). [score:1]
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16
[+] score: 3
A set of miRNA members, such as miR156, miR159, miR167, miR168, miR171, miR319, and miR396 of Arabidopsis, exhibit altered expression levels upon salt (Yu et al., 2005; Ding et al., 2009). [score:3]
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17
[+] score: 1
In Group 2, miR171 was decreased, and 2 others (miR2008 and miR2012) were increased after powdery mildew infection. [score:1]
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18
[+] score: 1
Other miRNAs from this paper: osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR166a, osa-MIR166b, osa-MIR166c, osa-MIR166d, osa-MIR166e, osa-MIR166f, osa-MIR171a, osa-MIR393a, osa-MIR397a, osa-MIR397b, osa-MIR156k, osa-MIR156l, osa-MIR159a, osa-MIR159b, osa-MIR159c, osa-MIR159d, osa-MIR159e, osa-MIR159f, osa-MIR319b, osa-MIR166k, osa-MIR166l, osa-MIR168a, osa-MIR168b, osa-MIR169f, osa-MIR171b, osa-MIR171c, osa-MIR171d, osa-MIR171e, osa-MIR171f, osa-MIR171g, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR166g, osa-MIR166h, osa-MIR166i, osa-MIR171h, osa-MIR393b, osa-MIR172d, osa-MIR171i, osa-MIR166m, osa-MIR166j, zma-MIR156d, zma-MIR156f, zma-MIR156g, zma-MIR156b, zma-MIR156c, zma-MIR156e, zma-MIR156a, zma-MIR156h, zma-MIR156i, zma-MIR166a, zma-MIR166h, zma-MIR166e, zma-MIR166i, zma-MIR166f, zma-MIR166g, zma-MIR166b, zma-MIR166c, zma-MIR166d, zma-MIR171a, zma-MIR171b, zma-MIR172a, zma-MIR172d, zma-MIR172b, zma-MIR172c, zma-MIR171d, zma-MIR171f, zma-MIR156j, zma-MIR159a, zma-MIR159b, zma-MIR159c, zma-MIR159d, zma-MIR319b, zma-MIR166k, zma-MIR166j, zma-MIR168a, zma-MIR168b, zma-MIR169f, zma-MIR171c, zma-MIR171j, zma-MIR171e, zma-MIR171i, zma-MIR171g, zma-MIR172e, zma-MIR166l, zma-MIR166m, zma-MIR171k, zma-MIR171h, zma-MIR393a, zma-MIR156k, osa-MIR529a, tae-MIR159a, tae-MIR159b, tae-MIR1120a, osa-MIR1430, zma-MIR156l, zma-MIR159e, zma-MIR159f, zma-MIR159g, zma-MIR159h, zma-MIR159i, zma-MIR159j, zma-MIR159k, zma-MIR166n, zma-MIR171l, zma-MIR171m, zma-MIR171n, zma-MIR393b, zma-MIR393c, zma-MIR397a, zma-MIR397b, hvu-MIR156a, tae-MIR156, hvu-MIR159b, hvu-MIR159a, hvu-MIR166a, hvu-MIR168, hvu-MIR171, hvu-MIR397a, tae-MIR171b, hvu-MIR1120, hvu-MIR166b, osa-MIR3981, hvu-MIR166c, tae-MIR1120b, tae-MIR397, tae-MIR1120c, hvu-MIR397b, hvu-MIR156b
The purity of RNA samples depleted of DNA traces was controlled by PCR amplification of the barley MIR171 gene. [score:1]
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19
[+] score: 1
Gupta et al. (2012a) reported that miR167, miR171, miR444, miR1129, and miR1138 are players in resistance of wheat against rust. [score:1]
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