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14 publications mentioning tae-MIR408

Open access articles that are associated with the species Triticum aestivum and mention the gene name MIR408. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 50
Expression Analysis of TaemiR408, miR408 Tobacco Homolog, and Target Genes. [score:5]
Moreover, expression analysis revealed that NtBCP, NtKRP, and NtAMP, three target genes of miR408, exhibited reduced transcripts abundance in the transgenic lines (OE2 and OE3) than in the wild type plants under salt stress treatment (Supplementary Figures S3A–C). [score:5]
Further identification of the target genes can help establish the miR408/target action modules underlying this miRNA. [score:5]
Additionally, the miR408 target genes including NtBCP, NtKRP, and NtAMP showed lowered expression levels in the transgenic lines (OE2 and OE3) than in wild type under low-Pi stress (Supplementary Figures S3A–C). [score:5]
miR408 and the Target Genes Are Responses to Pi Starvation and Salt Stress. [score:3]
The expression patterns of TaemiR408, miR408 tobacco homolog (referred to as NtMIR408 hereafter), and the target genes of TaemiR408 upon Pi starvation and salt stress were evaluated. [score:3]
miR408 overexpression causes increased drought tolerance in chickpea. [score:3]
In Arabidopsis, transgene analyses on miR408 have indicated that overexpression of this miRNA member confers plants enhanced sensitivity to drought stress aside from its role in improving tolerance to salinity, cold and oxidative stress through reduced reactive oxygen species and induced transcription of antioxidative encoding genes. [score:3]
The tae-miR408 -mediated control of TaTOC1 genes transcription is required for the regulation of heading time in wheat. [score:2]
miR408 shows multiple roles in regulating plant response to abiotic stresses, as shown in this current study and previously reported (Ma et al., 2015). [score:2]
These findings suggest that miR408 acts as a crucial regulator in multiple biological processes. [score:2]
MI0021410), suggesting that miR408 is conserved and the tobacco miR408 family consists of a set of members. [score:1]
miR408 is involved in abiotic stress responses in Arabidopsis. [score:1]
This finding is in agreement with the miR408 function in Arabidopsis as aforementioned, suggesting the conserved role of this miRNA in mediating plant drought stress response. [score:1]
MiR408 regulates grain yield and photosynthesis via a phytocyanin protein. [score:1]
miR408 is a conserved miRNA family member across diverse plant species. [score:1]
Given the conserved nature of miR408 across wheat and tobacco as described above, we transformed TaemiR408 into tobacco, due to its genetic transformation conveniently relative to that of wheat. [score:1]
Given that most miRNAs share conserved nature across eukaryotes, we addressed if miR408 is also present in both monocot and eudicot by identifying the miRNA paralog in tobacco. [score:1]
To date, although a line of investigations in wheat on identifying miRNA target genes (Sun et al., 2014), characterizing miRNA/target expression patterns upon abiotic stresses (Zhao et al., 2013; Wang et al., 2014; Sinha et al., 2015; Bakhshi et al., 2017), and evaluating miRNA -mediated plant adaptation to stressors, such as Pi starvation (Ouyang et al., 2016) and N deprivation (Gao et al., 2016), has been performed, the function of wheat miR408 (TaemiR408) remains largely unknown. [score:1]
miR408 Shows Conserved Nature Between Wheat and the Eudicot Tobacco. [score:1]
These discoveries suggest that miR408 is potential in genetically engineering crop cultivars with improved Pi use efficiency and salt stress tolerance. [score:1]
Our amplified NtMIR408 is not same as the miR408 member deposited in N. tabacum miRNA database (Accession No. [score:1]
Additionally, TaemiR408 and its tobacco paralog shares identical precursor each other, suggesting the conserved nature of miR408 in monocots and eudicots. [score:1]
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2
[+] score: 33
Downregulation of miR156, miR159, miR164, miR398, and miR408 was observed under Cd stress while their targets were mostly upregulated. [score:9]
Corresponding to the Feng study, miR408 downregulation also led to upregulation of the target chemocyanin gene in response to Cd stress (Table 3). [score:9]
In another study, Feng and colleagues showed the differential expression of miR408 which targets the TaCLP1, which encodes a chemoxyanin belonging to blue copper proteins under high Cu condition (Table 3). [score:5]
Differential expression of miR159, miR167, miR1122, miR1125, miR1135, mir1136, miR1139, and miR408 was also observed under Pi deprivation in wheat (Zhao et al. 2013). [score:3]
miR408 was also found to target cadmium and copper transport elements together with their associated transcription factors in Arabidopsis. [score:3]
dicocoides Cu–Zn super oxide dismutaseKantar et al. 2011a miR399 H. vulgare No targetLv et al. 2012 miR408 T. turgidum ssp. [score:3]
Among these, miR159, miR167, and miR408 have orthologues from several dicot plants. [score:1]
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3
[+] score: 20
One of the target genes of the upregulated bdi-miR408-5p encodes TF TCP15, whose activity is inhibited by oxidative stress (Viola et al., 2013). [score:8]
Among the known differential miRNAs in our study, some regulated two or more target genes with the same function, such as bdi-miR159a and bdi-miR169d/k, whereas more miRNAs, such as bdi-miR395, bdi-miR408, and bdi-miR528, regulated two or more target genes with different functions (Figure 4 and Table 1). [score:7]
Overexpression of miR408 in Arabidopsis can improve its tolerance to oxidative stress (Ma et al., 2015). [score:3]
However, only a few H [2]O [2]-responsive miRNAs (miR169, miR397, miR1425, miR408-5p, miR827, miR528, and miR319a. [score:1]
miR408 is involved in abiotic stress responses in Arabidopsis. [score:1]
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4
[+] score: 13
In wheat, Zhao et al. (2016) recently demonstrated that the microRNA tae-miR408 targets and down-regulates expression levels of all three wheat paralogs of TaTOC1 (TaTOC-A1, TaTOC-B1, and TaTOC-D1) under both LDs and SDs, thereby regulating heading time and associated agronomic traits. [score:9]
Wheat Arabidopsis Function Chromosome Reference Functional orthologs TaCO1/TaHD1 AtCO Flowering promoter under inductive LD conditions 4A Nemoto et al., 2003; Shimada et al., 2009 TaFT1 (VRN3) AtFT Flowering promoter 5D Yan et al., 2006 TaGI1 AtGI Flowering promoter 3H Zhao et al., 2005 TaRHT-B1, TaRHT-D1 AtGAI Gibberellin metabolism 2D Pearce et al., 2013; Boden et al., 2014 Homologs with pleiotropic or divergent function TaTOC1 AtTOC1/AtPRR1 tae-miR408 -mediated oscillation regulator, affects flag leaf angle and plant height 6A/6B/6D Zhao et al., 2016 TaPPD1 AtPRR7 Photoperiod sensitivity and flowering time 2D Beales et al., 2007 TaVRN1 AtAP1/AtCAL/AtFUL Flowering promoter in response to vernalization 5A Yan et al., 2003; Shimada et al., 2009 TaVRN2 AtCOL Flowering repressor 4B, 5A Yan et al., 2004 TaVRN4 AtAP1/AtCAL/AtFULParalog of TaVRN-A1, modulates vernalization response 5D Kippes et al., 2015Functional orthologs have a conserved function; homologs have a pleiotropic or divergent function. [score:2]
The tae-mir408 -mediated control of TaTOC1 genes transcription is required for the regulation of heading time in wheat. [score:2]
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5
[+] score: 10
Other miRNAs from this paper: osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR164a, osa-MIR164b, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR171a, osa-MIR393a, osa-MIR396a, osa-MIR396b, osa-MIR396c, osa-MIR397a, osa-MIR397b, osa-MIR399a, osa-MIR399b, osa-MIR399c, osa-MIR399d, osa-MIR399e, osa-MIR399f, osa-MIR399g, osa-MIR399h, osa-MIR399i, osa-MIR399j, osa-MIR399k, osa-MIR156k, osa-MIR156l, osa-MIR159a, osa-MIR159b, osa-MIR159c, osa-MIR159d, osa-MIR159e, osa-MIR159f, osa-MIR319a, osa-MIR319b, osa-MIR160e, osa-MIR160f, osa-MIR164c, osa-MIR164d, osa-MIR164e, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR168a, osa-MIR168b, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR171b, osa-MIR171c, osa-MIR171d, osa-MIR171e, osa-MIR171f, osa-MIR171g, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR171h, osa-MIR393b, osa-MIR408, osa-MIR172d, osa-MIR171i, osa-MIR167j, osa-MIR164f, osa-MIR390, osa-MIR439a, osa-MIR439b, osa-MIR439c, osa-MIR439d, osa-MIR439e, osa-MIR439f, osa-MIR439g, osa-MIR439h, osa-MIR439i, osa-MIR396e, osa-MIR444a, tae-MIR159a, tae-MIR159b, tae-MIR160, tae-MIR164, tae-MIR167a, tae-MIR171a, tae-MIR399, tae-MIR444a, osa-MIR169r, osa-MIR444b, osa-MIR444c, osa-MIR444d, osa-MIR444e, osa-MIR444f, osa-MIR396f, osa-MIR396g, osa-MIR396h, osa-MIR396d, tae-MIR156, tae-MIR319, tae-MIR167b, tae-MIR169, tae-MIR444b, tae-MIR171b, tae-MIR396, tae-MIR167c, tae-MIR397
MiR408 could target blue copper proteins (plantacyanins) and wheat miR168 targets argonaute, which is encoded by Ta. [score:5]
TIR1, plantacyanin and argonaute have been validated as genuine targets of miR393, miR408 and miR168 in Arabidopsis, rice and Populus [10, 11, 13, 28, 46, 49]. [score:3]
This analysis revealed perfect matching of nine miRNA families, miR159, miR160, miR164, miR167, miR169, miR170, miR399, miR408 and miR444, to 14 ESTs. [score:1]
These include miRNA156/157, miR159, miR160, miR164, miR165/166, miR167, miR168, miR169, miR170/171, miR172, miR319, miR390, miR393, miR396, miR397, miR399 and miR408, which are conserved in diverse plant species (Table 2). [score:1]
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6
[+] score: 9
For 13 highly conserved miRNA families differentially expressed in wheat grain development (Fig 3), five (miR165/166, miR171, miR393, miR396 and miR444), three (miR156, miR164 and miR168), two (miR319 and miR827), one (miR408) and two miRNAs (miR159 and miR167) belonged to Group I, II, III, IV and V, respectively. [score:4]
The targets of miR408 encode blue copper proteins, which bind copper ions and may participate in copper transportation and storage. [score:3]
Here, we identified two miRNAs (miR408 and miR827) associated with nutrient metabolism. [score:1]
Eleven miRNA variants were more abundant and substituted for the reported miRNA sequences such as miR156a, miR399 and miR408 (S3 and S4 Tables). [score:1]
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7
[+] score: 7
Other miRNAs from this paper: osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR162a, osa-MIR164a, osa-MIR166a, osa-MIR166b, osa-MIR166c, osa-MIR166d, osa-MIR166e, osa-MIR166f, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR394, osa-MIR395b, osa-MIR395d, osa-MIR395e, osa-MIR395g, osa-MIR395h, osa-MIR395i, osa-MIR395j, osa-MIR395k, osa-MIR395l, osa-MIR395s, osa-MIR395t, osa-MIR395c, osa-MIR395a, osa-MIR395f, osa-MIR395u, osa-MIR396a, osa-MIR396b, osa-MIR396c, osa-MIR397a, osa-MIR397b, osa-MIR398a, osa-MIR398b, osa-MIR399a, osa-MIR399b, osa-MIR399c, osa-MIR399d, osa-MIR399e, osa-MIR399f, osa-MIR399g, osa-MIR399h, osa-MIR399i, osa-MIR399j, osa-MIR399k, osa-MIR156k, osa-MIR156l, osa-MIR159b, osa-MIR162b, osa-MIR166k, osa-MIR166l, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR168a, osa-MIR168b, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR166g, osa-MIR166h, osa-MIR166i, osa-MIR408, osa-MIR172d, osa-MIR167j, osa-MIR166m, osa-MIR166j, osa-MIR437, osa-MIR396e, osa-MIR444a, osa-MIR528, osa-MIR529a, osa-MIR395m, osa-MIR395n, osa-MIR395o, osa-MIR395p, osa-MIR395q, osa-MIR395v, osa-MIR395w, osa-MIR395r, osa-MIR529b, tae-MIR159b, tae-MIR167a, tae-MIR399, tae-MIR444a, osa-MIR1432, osa-MIR444b, osa-MIR444c, osa-MIR444d, osa-MIR444e, osa-MIR444f, osa-MIR1848, osa-MIR1858a, osa-MIR1858b, osa-MIR1862a, osa-MIR1862b, osa-MIR1862c, osa-MIR1871, osa-MIR1862d, osa-MIR1862e, osa-MIR827, osa-MIR396f, osa-MIR396g, osa-MIR396h, osa-MIR396d, osa-MIR395x, osa-MIR395y, hvu-MIR156a, tae-MIR156, hvu-MIR159b, hvu-MIR166a, tae-MIR167b, hvu-MIR168, tae-MIR395a, tae-MIR395b, hvu-MIR397a, tae-MIR398, tae-MIR444b, hvu-MIR166b, hvu-MIR444a, osa-MIR1862f, osa-MIR1862g, hvu-MIR399, hvu-MIR444b, hvu-MIR166c, tae-MIR396, tae-MIR167c, tae-MIR397, hvu-MIR397b, hvu-MIR156b
The miR172, miR394 and miR408 families, which are transcribed in rice and are believed to regulate an APETALA2 transcription factor [43], a F-box protein [19] and a plantacyanin [44], respectively, are abundantly expressed in our unprocessed dataset. [score:4]
Hence, wheat and Brachypodium, but not barley, miRNA candidates for members of the miR172, miR394 and miR408 families are listed in Table 2. The miR398 family, which is present in Arabidposis (3 members), rice (2 members), Brachypodium and wheat, is not present in our barley dataset. [score:1]
Hence, wheat and Brachypodium, but not barley, miRNA candidates for members of the miR172, miR394 and miR408 families are listed in Table 2. The miR398 family, which is present in Arabidposis (3 members), rice (2 members), Brachypodium and wheat, is not present in our barley dataset. [score:1]
Specifically, the read similar to miR172 can be found (with ≤ 3 mismatches) in the Gypsy-class retrotransposon (Triticae Repeat Sequence Database entry TREP3208, Triticum aestivum sequence), the read that matches miR394 is similar to a number of Harbinger-class DNA transposon entries (e. g. TREP3044, Oryza sativa sequence) and the read that matches miR408 is similar to the Gypsy-class retrotransposon TREP2268 (Triticum durum sequence). [score:1]
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8
[+] score: 5
In a previous study based on 12-day old seedlings of heat tolerant cultivar HD2985 subjected to 42 °C for 2 hours, 44 mature known wheat miRNAs (miRbase v19) were identified from mixed samples of root, stem, flag leaf and pollen tissues, among which, 19 were differentially expressed including four families (miR1130, miR1136, miR395a and miR408) showing expression only in heat stressed plants 51. [score:5]
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9
[+] score: 4
ME, whereas others such as hvu-miR1120, tae-miR9778, and tae-miR408 were down-regulated. [score:4]
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10
[+] score: 4
The expression levels of DREB1A and DREB2A were relatively induced in miR408 overexpressed plants compared to the vector control upon drought stress [39]. [score:4]
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11
[+] score: 3
Many miRNA families, such as Tae-miR171, Tae-miR393, and Tae-miR855, as well as Tae-miR408, were reported to have induced expression under salinity stress in wheat [20, 21]. [score:3]
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12
[+] score: 3
Target of tae-miR408, a chemocyanin-like protein gene (TaCLP1), plays positive roles in wheat response to high-salinity, heavy cupric stress and stripe rust. [score:3]
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13
[+] score: 1
Interestingly, 65 of the identified rice lincRNAs were predicted to be ‘decoys’ of conserved miRNAs, such as miR160, miR164, miR168, miR169 and miR408 (Additional files 9 and 10). [score:1]
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14
[+] score: 1
In Arabidopsis, 16 miRNAs, including miR156, miR159, miR164, miR165, miR168, miR169, miR172, miR319, miR389, miR393, miR396, miR397, miR398, miR400, miR402, and miR408, were identified by RNA gel blot analysis [12], microarray analysis [13], and a computation -based approach to be related to cold response [14]. [score:1]
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