Stem-loop tae-MIR408

Accession

MI0006177

Description

Triticum aestivum tae-MIR408 precursor miRNA

Literature search

29 open access papers mention tae-MIR408
(296 sentences)

Sequence

29962 reads, 770.0 reads per million, 212 experiments

auuuugugaguggagaggggggaggagaCAGGGAUGGAGCAGAGCAAGGgaugaggcaagcaacaaaauuuaccaccugauuaugagaagagggagagaguugccagagcuucuguugcuguuguugcucccucccUGCACUGCCUCUUCCCUGGCUccccucccaaaucucucccucccccucucu
...........(((((((((((.(((((..((((.((....((((.(((((.((((((.((..((.((((........)))).)).....((((((.((((.((.(.(((.......))).).)).)))).))))))))..)))))).))))).)))))).)))).....))))).)))))))))))

Structure

auuuugugagu           a     ---CA    U  AGCA    A     u      -a  aacaaaauuuaccaccugauuaugagaag      a    u  c g   uu 
           ggagagggggg ggaga     GGGA GG    GAGC AGGga gaggca  gc                             agggag gagu gc a agc  c
           ||||||||||| |||||     |||| ||    |||| ||||| ||||||  ||                             |||||| |||| || | |||  u
           ucucucccccu ccucu     cccu cc    cUCG UCCCU CUCCGU  CG                             Ucccuc cucg ug u ucg  g
-----------           c     cuaaa    c  ----    G     U      CA  -----------------------------      c    u  u g   uu 

Annotation confidence Low

Genome context

Unknown

Mature tae-miR408-5p

• Accession: MIMAT0056476
• Description: Triticum aestivum tae-miR408-5p mature miRNA
• Sequence: 29 - CAGGGAUGGAGCAGAGCAAGG - 49
• Evidence: experimental ; unknown

Mature tae-miR408-3p

• Accession: MIMAT0005350
• Description: Triticum aestivum tae-miR408-3p mature miRNA
• Sequence: 137 - UGCACUGCCUCUUCCCUGGCU - 157
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17543110
   Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
   Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
   Genome Biol (2007) 8:R96