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11 publications mentioning tae-MIR1136

Open access articles that are associated with the species Triticum aestivum and mention the gene name MIR1136. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 7
Intriguingly, miRNAs targetting stress-responsive lncRNAs were mostly dominated by miR1436 and miR1439, where miR1118, miR1122, miR1130, miR1137 and miR1139 possessed putative lncRNA targets in TR39477 samples only, and miR1133 and miR1136 targeted lncRNAs in Kiziltan and TR39477, moderate to high tolerant samples (Supplemental File  2). [score:7]
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2
[+] score: 6
Except bdi-miR171c, tae-miR1136 and hvu-miR6201, which had only a single target all the other known miRNAs had multiple targets. [score:5]
The identified known miRNAs belonged to 20 families, out of which 9 (miR1117, miR1120, miR1135, miR1136, miR1318, miR1432, miR1436, miR5084 and miR6201) were monocot-specific [43]. [score:1]
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3
[+] score: 5
In a previous study based on 12-day old seedlings of heat tolerant cultivar HD2985 subjected to 42 °C for 2 hours, 44 mature known wheat miRNAs (miRbase v19) were identified from mixed samples of root, stem, flag leaf and pollen tissues, among which, 19 were differentially expressed including four families (miR1130, miR1136, miR395a and miR408) showing expression only in heat stressed plants 51. [score:5]
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4
[+] score: 5
Differential expression of miR159, miR167, miR1122, miR1125, miR1135, mir1136, miR1139, and miR408 was also observed under Pi deprivation in wheat (Zhao et al. 2013). [score:3]
durum –Liu et al. 2015a miR1136 T. turgidum ssp. [score:1]
However, orthologues of miR1122, miR1125, miR1135, mir1136, and miR1139 are not detected in dicots, thus suggesting that these miRNAs may be monocot-specific. [score:1]
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5
[+] score: 3
Other miRNAs from this paper: osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR395b, osa-MIR395d, osa-MIR395e, osa-MIR395g, osa-MIR395h, osa-MIR395i, osa-MIR395j, osa-MIR395k, osa-MIR395l, osa-MIR395s, osa-MIR395t, osa-MIR395c, osa-MIR395a, osa-MIR395f, osa-MIR395u, osa-MIR398a, osa-MIR398b, osa-MIR160e, osa-MIR160f, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR167j, osa-MIR437, osa-MIR395m, osa-MIR395n, osa-MIR395o, osa-MIR395p, osa-MIR395q, osa-MIR395v, osa-MIR395w, osa-MIR395r, osa-MIR818a, osa-MIR818b, osa-MIR818c, osa-MIR818d, osa-MIR818e, tae-MIR160, tae-MIR167a, tae-MIR1117, tae-MIR1118, tae-MIR1120a, tae-MIR1122a, tae-MIR1125, tae-MIR1127a, tae-MIR1128, tae-MIR1131, tae-MIR1133, tae-MIR1135, tae-MIR1139, osa-MIR169r, osa-MIR1436, osa-MIR1439, osa-MIR2118a, osa-MIR2118b, osa-MIR2118c, osa-MIR2118d, osa-MIR2118e, osa-MIR2118f, osa-MIR2118g, osa-MIR2118h, osa-MIR2118i, osa-MIR2118j, osa-MIR2118k, osa-MIR2118l, osa-MIR2118m, osa-MIR2118n, osa-MIR2118o, osa-MIR2118p, osa-MIR2118q, osa-MIR2118r, bdi-MIR167a, bdi-MIR1139, bdi-MIR1122, bdi-MIR437, bdi-MIR169b, bdi-MIR1127, bdi-MIR1135, osa-MIR395x, osa-MIR395y, tae-MIR167b, tae-MIR169, tae-MIR395a, tae-MIR395b, tae-MIR398, tae-MIR5085, bdi-MIR5070, bdi-MIR169d, bdi-MIR169i, bdi-MIR395a, bdi-MIR169j, bdi-MIR160a, bdi-MIR395b, bdi-MIR167b, bdi-MIR160b, bdi-MIR167c, bdi-MIR169k, bdi-MIR160c, bdi-MIR167d, bdi-MIR169g, bdi-MIR160d, bdi-MIR160e, bdi-MIR169e, bdi-MIR398a, bdi-MIR169a, bdi-MIR169h, bdi-MIR169c, bdi-MIR395c, bdi-MIR5180b, bdi-MIR5175a, bdi-MIR5175b, bdi-MIR395d, bdi-MIR398b, bdi-MIR5180a, bdi-MIR169f, bdi-MIR395m, bdi-MIR395e, bdi-MIR395f, bdi-MIR395g, bdi-MIR395h, bdi-MIR395j, bdi-MIR395k, bdi-MIR395l, bdi-MIR395n, osa-MIR818f, bdi-MIR167e, bdi-MIR395o, bdi-MIR395p, bdi-MIR5049, bdi-MIR160f, bdi-MIR167f, bdi-MIR167g, bdi-MIR169l, bdi-MIR169m, bdi-MIR169n, bdi-MIR395q, bdi-MIR2118a, bdi-MIR2118b, tae-MIR1122b, tae-MIR1127b, tae-MIR1122c, tae-MIR167c, tae-MIR5175, tae-MIR1120b, tae-MIR1120c, tae-MIR6197, tae-MIR5049
However, three of the highly represented miRNAs (miR1122, miR1136, miR1436) with more than 100 copies also gave EST hits (Table 3). [score:1]
A total of 6 (out of 55) miRNAs; 4 (miR1136, miR1436, miR167, miR5205) from 5DL, 4 (miR1122, miR1136, miR1436, miR1439) from 5DS, and 2(miR1136 and miR1436) of which were located in both chromosome arms matched an EST with no significant similarity to known proteins (Table 3), suggesting that these putative pre-miRNA sequences are transcribed. [score:1]
5D miRNAs with the highest apparent representation (over 100 copies) were miR1117, miR1120, miR1139, miR1436, miR5049 in 5DS; miR1117, miR1120, miR1122, miR1131, miR1135, miR1136, miR1436, miR5049 in 5DL (Data S3; Table 1). [score:1]
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6
[+] score: 3
Unigene8446 and unigene27318 were highly induced at 24 hpi with 43.83- and 90.36-folds compared with control, while PC-490 and tae-miR1136-p3 showed only two-folds down regulated expression at 48 and 120 hpi, respectively. [score:3]
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7
[+] score: 2
The majority of the remaining matches to both datasets were TE-related, indicating that TE sequences are significantly represented in the small RNA population in wheat cells; perfect EST matches to instances of miR1120, miR1122, miR1135, miR1136, miR1139, miR2027 & miR2031 indicate that some of these sequences are also transcribed from chromosome 1AL. [score:1]
One instance each of miR1120, miR1136 & miR1139, 4 copies of miR1122, and 5 of miR1135 gave 100% identical matches to an EST, indicating that despite being DNA transposons, some of these sequences can be transcribed from chromosome 1AL. [score:1]
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8
[+] score: 1
Interestingly, wheat has several less-conserved miRNAs which were reported previously only in monocots, such as miR5054, miR5062, miR5064, miR5200, miR5203 in Brachypodium distachyon [40], miR5049, miR5048, miR6191, miR6203 in Hordeum vulgare [23, 41], miR1318, miR5071, miR5072, miR5073, miR5077, miR5082, miR5083, miR5538, miR818 in Oryza sativa [42], miR1125, miR1127, miR1136 in wheat [18]. [score:1]
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9
[+] score: 1
miRNA names EST miR1117 gi|44888773|gb|AY534123.1|SEG_AY534122S2, gi| 442614136|gb|JX295577.1|, gi| 219814405| gb| FJ436986.1| miR1118 gi| 442614136|gb|JX295577.1| miR1120 gi|442614136|gb|JX295577.1| miR1125 gi|442614136|gb|JX295577.1| miR1128 Contig94874 miR1130 gi|300689672|gb|FJ898281.1|, gi|300689671|gb|FJ898280.1|, gi|300689650|gb|FJ898269.1| miR1135 AEGTA02478, Contig23917 miR1136 gi|22038180|gb|AY013754.1|, Contig23917, AEGTA02478 miR1436 gi|442614136|gb|JX295577.1| miR1439 gi|442614136|gb|JX295577.1| miR437 gi|13447949|gb|AF338431.1|AF338431, gi|13447949|gb|AF338431.1|AF338431 miR5049 Contig115885, Contig29895 miR5064 AEGTA07380 miR5086 gi|21779916|gb|AF497474.1| miR5174 Gb|JX295577.1, gb|GU211253.1 miR5180 Contig22176Hit names starting with “gi” were derived from NCBI A. tauschii (taxid:37682) EST database, while the others were derived from the transcriptome assembly of a recent study (Jia et al., 2013). [score:1]
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10
[+] score: 1
For miR1128, miR1135 and miR1136, higher responses to the growth temperature were observed in Ldn/KU-2059 than in Ldn/KU-2025. [score:1]
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11
[+] score: 1
MiR1122 consisted of 8 members (tae-miR1122a, tae-miR1122b-3p, tae-miR1127a, tae-miR1127b-3p, tae-miR1128, tae-miR1133, tae-miR1135 and tae-miR1136). [score:1]
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