sort by

7 publications mentioning tae-MIR1139

Open access articles that are associated with the species Triticum aestivum and mention the gene name MIR1139. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 7
Additionally, miR1139 was up-regulated at 3 DC and was predicted to target the transcription factor Myb1, perhaps through a complex regulation of the embryogenic callus formation. [score:7]
[1 to 20 of 1 sentences]
2
[+] score: 7
Intriguingly, miRNAs targetting stress-responsive lncRNAs were mostly dominated by miR1436 and miR1439, where miR1118, miR1122, miR1130, miR1137 and miR1139 possessed putative lncRNA targets in TR39477 samples only, and miR1133 and miR1136 targeted lncRNAs in Kiziltan and TR39477, moderate to high tolerant samples (Supplemental FileĀ  2). [score:7]
[1 to 20 of 1 sentences]
3
[+] score: 4
The majority of the remaining matches to both datasets were TE-related, indicating that TE sequences are significantly represented in the small RNA population in wheat cells; perfect EST matches to instances of miR1120, miR1122, miR1135, miR1136, miR1139, miR2027 & miR2031 indicate that some of these sequences are also transcribed from chromosome 1AL. [score:1]
15 of the highly represented miRNAs matched MITEs from the Stowaway family, Mariner sub -family, while 164/168 hits for miR1139 matched a single MITE from the Tourist family, Harbinger sub -family. [score:1]
The majority of these transposon-related miRNAs were all first identified in the same study by high-throughput sequencing of a wheat small RNA library, followed by identification of hairpin precursors in wheat ESTs ([16]; note that miR1117-miR1139 are referred to as TamiR501-TamiR523 in the original study); putative paralogs of some of these have subsequently been identified computationally in other grass species [20], [27], [28]. [score:1]
One instance each of miR1120, miR1136 & miR1139, 4 copies of miR1122, and 5 of miR1135 gave 100% identical matches to an EST, indicating that despite being DNA transposons, some of these sequences can be transcribed from chromosome 1AL. [score:1]
[1 to 20 of 4 sentences]
4
[+] score: 4
Differential expression of miR159, miR167, miR1122, miR1125, miR1135, mir1136, miR1139, and miR408 was also observed under Pi deprivation in wheat (Zhao et al. 2013). [score:3]
However, orthologues of miR1122, miR1125, miR1135, mir1136, and miR1139 are not detected in dicots, thus suggesting that these miRNAs may be monocot-specific. [score:1]
[1 to 20 of 2 sentences]
5
[+] score: 2
Other miRNAs from this paper: osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR395b, osa-MIR395d, osa-MIR395e, osa-MIR395g, osa-MIR395h, osa-MIR395i, osa-MIR395j, osa-MIR395k, osa-MIR395l, osa-MIR395s, osa-MIR395t, osa-MIR395c, osa-MIR395a, osa-MIR395f, osa-MIR395u, osa-MIR398a, osa-MIR398b, osa-MIR160e, osa-MIR160f, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR167j, osa-MIR437, osa-MIR395m, osa-MIR395n, osa-MIR395o, osa-MIR395p, osa-MIR395q, osa-MIR395v, osa-MIR395w, osa-MIR395r, osa-MIR818a, osa-MIR818b, osa-MIR818c, osa-MIR818d, osa-MIR818e, tae-MIR160, tae-MIR167a, tae-MIR1117, tae-MIR1118, tae-MIR1120a, tae-MIR1122a, tae-MIR1125, tae-MIR1127a, tae-MIR1128, tae-MIR1131, tae-MIR1133, tae-MIR1135, tae-MIR1136, osa-MIR169r, osa-MIR1436, osa-MIR1439, osa-MIR2118a, osa-MIR2118b, osa-MIR2118c, osa-MIR2118d, osa-MIR2118e, osa-MIR2118f, osa-MIR2118g, osa-MIR2118h, osa-MIR2118i, osa-MIR2118j, osa-MIR2118k, osa-MIR2118l, osa-MIR2118m, osa-MIR2118n, osa-MIR2118o, osa-MIR2118p, osa-MIR2118q, osa-MIR2118r, bdi-MIR167a, bdi-MIR1139, bdi-MIR1122, bdi-MIR437, bdi-MIR169b, bdi-MIR1127, bdi-MIR1135, osa-MIR395x, osa-MIR395y, tae-MIR167b, tae-MIR169, tae-MIR395a, tae-MIR395b, tae-MIR398, tae-MIR5085, bdi-MIR5070, bdi-MIR169d, bdi-MIR169i, bdi-MIR395a, bdi-MIR169j, bdi-MIR160a, bdi-MIR395b, bdi-MIR167b, bdi-MIR160b, bdi-MIR167c, bdi-MIR169k, bdi-MIR160c, bdi-MIR167d, bdi-MIR169g, bdi-MIR160d, bdi-MIR160e, bdi-MIR169e, bdi-MIR398a, bdi-MIR169a, bdi-MIR169h, bdi-MIR169c, bdi-MIR395c, bdi-MIR5180b, bdi-MIR5175a, bdi-MIR5175b, bdi-MIR395d, bdi-MIR398b, bdi-MIR5180a, bdi-MIR169f, bdi-MIR395m, bdi-MIR395e, bdi-MIR395f, bdi-MIR395g, bdi-MIR395h, bdi-MIR395j, bdi-MIR395k, bdi-MIR395l, bdi-MIR395n, osa-MIR818f, bdi-MIR167e, bdi-MIR395o, bdi-MIR395p, bdi-MIR5049, bdi-MIR160f, bdi-MIR167f, bdi-MIR167g, bdi-MIR169l, bdi-MIR169m, bdi-MIR169n, bdi-MIR395q, bdi-MIR2118a, bdi-MIR2118b, tae-MIR1122b, tae-MIR1127b, tae-MIR1122c, tae-MIR167c, tae-MIR5175, tae-MIR1120b, tae-MIR1120c, tae-MIR6197, tae-MIR5049
5D miRNAs with the highest apparent representation (over 100 copies) were miR1117, miR1120, miR1139, miR1436, miR5049 in 5DS; miR1117, miR1120, miR1122, miR1131, miR1135, miR1136, miR1436, miR5049 in 5DL (Data S3; Table 1). [score:1]
Chr1 Chr2 Chr3 Chr4 Chr5 miR1127 * miR1128 * * * * * miR1133 * miR1135 * miR1139 * * * miR1439 * * * * * miR167 * miR395 * * miR5049 * * * * * miR5175 * * * miR5180 * * * miR5203 * * * * Bold miRNAs gave the best results that they were syntenic to Bd4. [score:1]
[1 to 20 of 2 sentences]
6
[+] score: 1
Of these, six miRNA families, namely miR1117, miR1130, miR1133, miR1139, miR5175, miR5205, were processed from exclusively repeat-related hairpins in A. tauschii but not in T. aestivum. [score:1]
[1 to 20 of 1 sentences]
7
[+] score: 1
Furthermore, miR1139 and miR172 were only shared by the bread and durum wheat loci on the 3B chromosomes, not the wild emmer wheat. [score:1]
[1 to 20 of 1 sentences]