Stem-loop tae-MIR1139

Accession

MI0006201

Description

Triticum aestivum tae-MIR1139 precursor miRNA

Literature search

7 open access papers mention tae-MIR1139
(12 sentences)

Sequence

1089 reads, 5 reads per million, 115 experiments

gccacaguggAGAGUAACAUACACUAGUAACAuacacauaucccuagaacuauauaacuaccuucauaguggguagcaacauaagugugguaucaugcaaagcuucauuuauuagguuauagacucauauugcauugggacaugugauguuauaguaacuagcuaaguuacucaaacuaccucucuccucgauguuacuauugaaguuacucccacu
.....(((((.(((((((.(.((.(((((((((.(((((.((((..(((((((((..((((((.......))))))........))))))).))((((((.......(((((......)))))......)))))).)))).)))))..(((..(((((((.....)))))))..)))..............))))))))).))).))))))))))))

Structure

gccac     A       A A  C         --------------------------------------------a     a    ----------------------------------------ua  -       ------aa      uc 
     agugg GAGUAAC U CA UAGUAACAu                                             cacau uccc                                          ga acuauau        cuaccu  a
     ||||| ||||||| | || |||||||||                                             ||||| ||||                                          || |||||||        ||||||  u
     ucacc cucauug a gu aucauugua                                             gugua aggg                                          cu uggugug        gauggg  a
-----     -       a -  u         gcuccucucuccaucaaacucauugaaucgaucaaugauauugua     c    uuacguuauacucagauauuggauuauuuacuucgaaacgua  a       aauacaac      ug 

Annotation confidence Low

Comments

Yao et al. misname this sequence miR523 in [1]. miR1139 is unrelated to mammalian miR-523;

Genome context

6B: 157622002-157622218 [-]

Mature tae-miR1139

• Accession: MIMAT0005374
• Description: Triticum aestivum tae-miR1139 mature miRNA
• Sequence: 11 - AGAGUAACAUACACUAGUAACA - 32
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17543110
   Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
   Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
   Genome Biol (2007) 8:R96