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2 publications mentioning rco-MIR399a

Open access articles that are associated with the species Ricinus communis and mention the gene name MIR399a. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 12
High-throughput sequencing produced a large number of miRNA sequences, allowing us to determine the relative abundance of miRNAs in castor bean; the frequencies of miRNA families varied largely in different libraries, e. g. most members of miRNA156, miRNA167, miRNA168, miRNA535 were abundant in all libraries, whereas members of miRNA160, miRNA169, miRNA319, miRNA393, miRNA395, miRNA398 and miRNA399 were scarce in all libraries (see Table 2), indicating that expression level of miRNAs varies significantly among different miRNA families in castor bean. [score:3]
Of the 86 miRNAs, 69 miRNAs were expressed in all five libraries, which accounted for 80.2%; 13 miRNAs (including one miR159/319, nine miR169s, one miR172, two miR399s) were not detected in the leaf library; seven miRNAs (including one miR160, four miR169s, one miR398 and miR2111) were not detected in the root library; ten miRNAs (including nine miR169s and one miR170/171) were not detected in the seed1 library; six miR169s were not detected in the seed2 library; and four miRNAs (including two miR169s, one miR170/171 and one miR399) were not detected in the endosperm tissue. [score:3]
Five (including one miR169 and four miR399) of 83 miRNAs predicted were not identified in our analysis, probably because the expression of the five miRNAs is related to environmental stress. [score:3]
Similarly, in the case of miR399, the isoform variant with a 3′ bi- nucleotide GG deletion (isomiR399b-d) was detected from three loci (b, c and d), and the isoform variant with a 3′ tri- nucleotide CAG deletion (iso-miR399e) was detected from the e locus. [score:1]
These results indicated that the isoform variants mainly occurred in several specific miRNA families such as miR156 (isoforms were detected from five loci), miR395 (isoforms were detected from five loci) and miR399 (isoforms were detected from four loci) in castor bean. [score:1]
The variation in length of isoforms identified involved two types: 1) single or several nucleotides addition or deletion in the 3′ strand only (such as miR167 and iso-miR167, miR395 and iso-miR395, miR399 and iso-miR399); and 2) single or several nucleotides addition or deletion both in the 5′ and 3′ strands simultaneously (such as miR156 and iso-miR156, miR171 and iso-miR171, miR398 and iso-miR398). [score:1]
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2
[+] score: 3
Other miRNAs from this paper: rco-MIR156a, rco-MIR156b, rco-MIR156c, rco-MIR156d, rco-MIR156e, rco-MIR156f, rco-MIR156g, rco-MIR156h, rco-MIR159, rco-MIR160a, rco-MIR160b, rco-MIR162, rco-MIR164a, rco-MIR164b, rco-MIR164c, rco-MIR164d, rco-MIR166a, rco-MIR166b, rco-MIR166c, rco-MIR166d, rco-MIR166e, rco-MIR167a, rco-MIR167b, rco-MIR167c, rco-MIR168, rco-MIR169a, rco-MIR169b, rco-MIR169c, rco-MIR171a, rco-MIR171b, rco-MIR171c, rco-MIR171d, rco-MIR171e, rco-MIR171f, rco-MIR171g, rco-MIR172, rco-MIR319a, rco-MIR319b, rco-MIR319c, rco-MIR319d, rco-MIR390a, rco-MIR390b, rco-MIR393, rco-MIR395a, rco-MIR395b, rco-MIR395c, rco-MIR395d, rco-MIR395e, rco-MIR396, rco-MIR398a, rco-MIR398b, rco-MIR399b, rco-MIR399c, rco-MIR399d, rco-MIR399e, rco-MIR399f, rco-MIR408, rco-MIR160c, mes-MIR159a, mes-MIR167a, mes-MIR168a, mes-MIR171a, mes-MIR172a, mes-MIR399a, mes-MIR408, mes-MIR156a, mes-MIR156b, mes-MIR156c, mes-MIR156d, mes-MIR156e, mes-MIR156f, mes-MIR156g, mes-MIR156h, mes-MIR156i, mes-MIR156j, mes-MIR156k, mes-MIR159b, mes-MIR159c, mes-MIR159d, mes-MIR160a, mes-MIR160b, mes-MIR160c, mes-MIR160d, mes-MIR160e, mes-MIR160f, mes-MIR160g, mes-MIR160h, mes-MIR162, mes-MIR164a, mes-MIR164b, mes-MIR164c, mes-MIR164d, mes-MIR166a, mes-MIR166b, mes-MIR166c, mes-MIR166d, mes-MIR166e, mes-MIR166f, mes-MIR166g, mes-MIR166h, mes-MIR166i, mes-MIR166j, mes-MIR167b, mes-MIR167c, mes-MIR167d, mes-MIR167e, mes-MIR167f, mes-MIR167g, mes-MIR167h, mes-MIR169a, mes-MIR169b, mes-MIR169c, mes-MIR169d, mes-MIR169e, mes-MIR169f, mes-MIR169g, mes-MIR169h, mes-MIR169i, mes-MIR169j, mes-MIR169k, mes-MIR169l, mes-MIR169m, mes-MIR169n, mes-MIR169o, mes-MIR169p, mes-MIR169q, mes-MIR169r, mes-MIR169s, mes-MIR169t, mes-MIR169u, mes-MIR169v, mes-MIR169w, mes-MIR169x, mes-MIR169y, mes-MIR169z, mes-MIR169aa, mes-MIR169ab, mes-MIR169ac, mes-MIR171b, mes-MIR171c, mes-MIR171d, mes-MIR171e, mes-MIR171f, mes-MIR171g, mes-MIR171h, mes-MIR171i, mes-MIR171j, mes-MIR171k, mes-MIR172b, mes-MIR172c, mes-MIR172d, mes-MIR172e, mes-MIR172f, mes-MIR319a, mes-MIR319b, mes-MIR319c, mes-MIR319d, mes-MIR319e, mes-MIR319f, mes-MIR319g, mes-MIR319h, mes-MIR390, mes-MIR393a, mes-MIR393b, mes-MIR393c, mes-MIR393d, mes-MIR395a, mes-MIR395b, mes-MIR395c, mes-MIR395d, mes-MIR395e, mes-MIR396a, mes-MIR396b, mes-MIR396c, mes-MIR396d, mes-MIR396e, mes-MIR396f, mes-MIR399b, mes-MIR399c, mes-MIR399d, mes-MIR399e, mes-MIR399f, mes-MIR399g, mes-MIR477h, mes-MIR477i, mes-MIR477a, mes-MIR477b, mes-MIR477c, mes-MIR477d, mes-MIR477e, mes-MIR477f, mes-MIR477g, mes-MIR482, mes-MIR828a, mes-MIR828b, mes-MIR171l, mes-MIR398, mes-MIR399h, mes-MIR477j, mes-MIR477k, mes-MIR2118, mes-MIR3627, mes-MIR169ad
For example, 5 genes (005409 m, 006360 m, 006048 m, 005437 m and 005421 m) targeted by miR399 function in the same biosynthetic process in CA vs. [score:3]
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