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3 publications mentioning aae-mir-1889

Open access articles that are associated with the species Aedes aegypti and mention the gene name mir-1889. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 11
Changes in the cytoplasm were more pronounced, bantam-5p, miR-8-3p, miR-263a-5p, miR-989, miR-1889-5p and miR-92a-3p were down-regulated and dropped from the list of the most abundant miRNAs, while the other six miRNAs were up-regulated; miR-14, miR-71-3p, miR-100, miR-11-3p, miR-125-5p and miR-306-5p (Table 1). [score:7]
In the cytoplasm, miR-11-5p, miR-92a-5p, miR-210, miR-932-5p and miR-1175-5p were suppressed and 14 miRNAs were induced; miR-1, miR-9a, miR-12-3p, miR-33, miR-34-3p, miR-79-3p, miR-124, miR-219, miR-252-5p, miR-286b, miR308-5p, miR-1000, miR-1889-3p and miR-1890 (Figure 8B). [score:3]
Fifty seven miRNAs were found in both compartments, but miR-1, miR-34-3p, miR-252-5p, miR-1889-3p and miR-1890 were detected only in the nucleus; nine other miRNAs were detected solely in the cytoplasm; miR-125-5p, miR-137, miR-210, miR-282-5p, miR-285, miR-932-5p, miR-1174, miR-1175-3p and miR-1175-5p (Figure 3A). [score:1]
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2
[+] score: 9
These are miR-1174, miR-1175 [21], miR-1889, miR-1890, and miR-1891 [27]. [score:1]
The newly identified aae-miR-1889 shows 3 mismatches in the 21 bp overlap with aga-miR-1889. [score:1]
MiR-1889 has similarity to the reverse-complementary sequence of miR-304 but the difference is significant enough for miRbase to assign a unique name for it. [score:1]
The second cluster includes miR-12 and miR-283, which flank either miR-304 in D. melanogaster or miR-1889 in An. [score:1]
Through small RNA sequencing and a closer analysis of the genome assembly, we identified miR-1889 in Ae. [score:1]
It is tempting to suggest that one of the two miRNA hairpins, miR-304 or miR-1889, was inverted during evolution. [score:1]
gambiae miR-1889 are flanked by the same miRNAs and that this miRNA cluster is found in an intron of orthologous genes in the two species, miR-304 and miR-1889 may have a common origin. [score:1]
The identification of aae-miR-1889 further supports the strand orientation of the mosquito miR-1889. [score:1]
The second block (miR-1174 through miR-1889) contains miRNAs that are homologous to previously reported "mosquito-specific" miRNAs. [score:1]
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3
[+] score: 4
recognition sites Mean MFE (Kcal/Mol) Recognition site start position on lincRNA_1317 miR-278-5p 5 -22.40 307, 749, 1112, 1260, 1491 miR-252-3p 4 -21.15 162, 629, 1560, 3946 miR-11-5p 3 -21.67 2248, 2286, 3328 miR-1890 3 -21.17 1489, 2712, 3602 miR-263a-3p 3 -21.47 2208, 2545, 3336 miR-33 3 -24.90 1545, 1810, 2669 miR-34-5p 3 -25.03 1020, 1232, 1379 miR-9b 3 -24.03 2034, 2891, 3603 let-7 2 -22.20 2747, 2817 miR-1 2 -22.80 1165, 2528 miR-1175-3p 2 -20.65 1489, 3274 miR-12-5p 2 -25.60 632, 1575 miR-1889-3p 2 -20.80 1268, 3988 miR-1891 2 -21.10 162, 2349 miR-282-5p 2 -25.70 1232, 1297 miR-2944b-3p 2 -22.05 1255, 3797 miR-2945-5p 2 -23.00 770, 1209 miR-31 2 -25.70 819, 871 miR-375 2 -22.25 66, 3293 miR-92b-5p 2 -23.05 1042, 3788 miR-9a 2 -20.65 170, 3500 We also used LncTar algorithm to predict any direct interaction between lincRNA_1317 and DENV-2 genome. [score:2]
recognition sites Mean MFE (Kcal/Mol) Recognition site start position on lincRNA_1317 miR-278-5p 5 -22.40 307, 749, 1112, 1260, 1491 miR-252-3p 4 -21.15 162, 629, 1560, 3946 miR-11-5p 3 -21.67 2248, 2286, 3328 miR-1890 3 -21.17 1489, 2712, 3602 miR-263a-3p 3 -21.47 2208, 2545, 3336 miR-33 3 -24.90 1545, 1810, 2669 miR-34-5p 3 -25.03 1020, 1232, 1379 miR-9b 3 -24.03 2034, 2891, 3603 let-7 2 -22.20 2747, 2817 miR-1 2 -22.80 1165, 2528 miR-1175-3p 2 -20.65 1489, 3274 miR-12-5p 2 -25.60 632, 1575 miR-1889-3p 2 -20.80 1268, 3988 miR-1891 2 -21.10 162, 2349 miR-282-5p 2 -25.70 1232, 1297 miR-2944b-3p 2 -22.05 1255, 3797 miR-2945-5p 2 -23.00 770, 1209 miR-31 2 -25.70 819, 871 miR-375 2 -22.25 66, 3293 miR-92b-5p 2 -23.05 1042, 3788 miR-9a 2 -20.65 170, 3500We also used LncTar algorithm to predict any direct interaction between lincRNA_1317 and DENV-2 genome. [score:2]
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