miRNA Search Results

sort by 3 publications mentioning tgu-mir-25 Open access articles that are associated with the species Taeniopygia guttata and mention the gene name mir-25. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.
1	[+] score: 8 Other miRNAs from this paper: hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3, hsa-let-7f-1, hsa-let-7f-2, hsa-mir-25, hsa-mir-29a, hsa-mir-92a-1, hsa-mir-92a-2, hsa-mir-192, hsa-mir-129-1, hsa-mir-219a-1, hsa-mir-124-1, hsa-mir-124-2, hsa-mir-124-3, hsa-mir-132, hsa-mir-9-1, hsa-mir-9-2, hsa-mir-9-3, hsa-mir-129-2, hsa-mir-134, hsa-mir-29c, hsa-mir-219a-2, gga-mir-29a, gga-let-7a-3, gga-mir-92-1, gga-mir-124a, gga-let-7f, gga-let-7a-1, gga-mir-219a, gga-mir-124b, gga-let-7a-2, gga-mir-29c, gga-mir-9-2, hsa-mir-92b, gga-mir-9-1, gga-mir-124a-2, gga-mir-2954, tgu-mir-219b, tgu-mir-2954, tgu-mir-2976-1, tgu-mir-2976-3, tgu-mir-2976-2, tgu-mir-2985-1, tgu-mir-2985-2, tgu-mir-129, tgu-mir-9-2, tgu-mir-9-1, tgu-mir-124-1, tgu-mir-124-2, tgu-mir-124-3, tgu-let-7a-1, tgu-let-7a-3, tgu-let-7a-2, tgu-let-7a-4, tgu-let-7f, tgu-mir-29a-1, tgu-mir-29a-2, tgu-mir-219a, tgu-mir-92-1, tgu-mir-92-2, gga-mir-219b, tgu-mir-192, tgu-mir-132, hsa-mir-219b, gga-mir-124c, gga-mir-9-3, gga-mir-92-2, gga-mir-9-4, gga-mir-2985-1, gga-mir-9b-1, gga-mir-132a, gga-mir-132b, gga-mir-132c, gga-mir-2985-2, gga-mir-129-1, gga-mir-129-2, gga-mir-129-3, gga-mir-9b-2 Probe sequences used for each target miRNA are given in Table 4. Table 4 Probes used for Taqman analysis of specific miRNA sequences miRBase name Company name Sequence detected tgu-let-7a let-7a 5'-UGAGGUAGUAGGUUGUAUAGUU-3' tgu-let-7f let-7f 5'-UGAGGUAGUAGAUUGUAUAGUU-3' tgu-miR-124 miR-124 5'-UAAGGCACGCGGUGAAUGCC-3' tgu-miR-9 miR-9 5'-UCUUUGGUUAUCUAGCUGUAUGA-3' tgu-miR-129-5p miR-129-5p 5'-CUUUUUGCGGUCUGGGCUUGC-3' tgu-miR-129-3p miR-129-3p 5'-AAGCCCUUACCCCAAAAAGCAU-3' tgu-miR-29a miR-29c 5'-UAGCACCAUUUGAAAUCGGU-3' tgu-miR-92 miR-92a 5'-UAUUGCACUUGUCCCGGCCUGU-3' tgu-miR-25 miR-25 5'-CAUUGCACUUGUCUCGGUCUGA-3' RNU6B RNU6B 5'-CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU-3' tgu-miR-2954-5p novel51F-5p 5'-GCUGAGAGGGCUUGGGGAGAGGA-3' tgu-miR-2954-3p novel51F-3p 5'-CAUCCCCAUUCCACUCCUAGCA-3' (Northern validated) tgu-miR-2954R-5p novel51R-5p 5'-UGCUAGGAGUGGAAUGGGGAUG-3' tgu-miR-2954R-3p novel51R-3p 5'-UCCUCUCCCCAAGCCCUCUCAGC-3' Northern blotting to confirm novel miRNA tgu-miR-2954-3p was performed by modifying the protocol of [97]. [score:3] Probe sequences used for each target miRNA are given in Table 4. Table 4 Probes used for Taqman analysis of specific miRNA sequences miRBase name Company name Sequence detected tgu-let-7a let-7a 5'-UGAGGUAGUAGGUUGUAUAGUU-3' tgu-let-7f let-7f 5'-UGAGGUAGUAGAUUGUAUAGUU-3' tgu-miR-124 miR-124 5'-UAAGGCACGCGGUGAAUGCC-3' tgu-miR-9 miR-9 5'-UCUUUGGUUAUCUAGCUGUAUGA-3' tgu-miR-129-5p miR-129-5p 5'-CUUUUUGCGGUCUGGGCUUGC-3' tgu-miR-129-3p miR-129-3p 5'-AAGCCCUUACCCCAAAAAGCAU-3' tgu-miR-29a miR-29c 5'-UAGCACCAUUUGAAAUCGGU-3' tgu-miR-92 miR-92a 5'-UAUUGCACUUGUCCCGGCCUGU-3' tgu-miR-25 miR-25 5'-CAUUGCACUUGUCUCGGUCUGA-3' RNU6B RNU6B 5'-CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU-3' tgu-miR-2954-5p novel51F-5p 5'-GCUGAGAGGGCUUGGGGAGAGGA-3' tgu-miR-2954-3p novel51F-3p 5'-CAUCCCCAUUCCACUCCUAGCA-3' (Northern validated) tgu-miR-2954R-5p novel51R-5p 5'-UGCUAGGAGUGGAAUGGGGAUG-3' tgu-miR-2954R-3p novel51R-3p 5'-UCCUCUCCCCAAGCCCUCUCAGC-3' Northern blotting to confirm novel miRNA tgu-miR-2954-3p was performed by modifying the protocol of [97]. [score:3] Five conserved miRNAs showed significant and consistent changes in copy number after song exposure across three biological replications of the song-silence comparison, with two increasing (tgu-miR-25, tgu-miR-192) and three decreasing (tgu-miR-92, tgu-miR-124, tgu-miR-129-5p). [score:1] Three miRNAs consistently decreased after song (tgu-miR-92, tgu-miR-124, tgu-miR-129-5p) and two increased (tgu-miR-25, tgu-miR-192). [score:1] [1 to 20 of 4 sentences]
2	[+] score: 4 Other miRNAs from this paper: tgu-mir-2955, tgu-mir-2956-1, tgu-mir-2956-2, tgu-mir-2963, tgu-mir-456, tgu-mir-425, tgu-mir-2954, tgu-mir-2973, tgu-mir-2978, tgu-mir-2983, tgu-mir-2984, tgu-mir-2987, tgu-mir-129, tgu-mir-9-2, tgu-mir-9-1, tgu-let-7i, tgu-mir-124-1, tgu-mir-124-2, tgu-mir-124-3, tgu-mir-101-1, tgu-mir-101-2, tgu-let-7b, tgu-mir-7-1, tgu-mir-7-2, tgu-mir-7-3, tgu-mir-7-4, tgu-let-7e, tgu-let-7a-1, tgu-let-7a-3, tgu-let-7a-2, tgu-let-7a-4, tgu-let-7c-1, tgu-let-7c-2, tgu-mir-218-1, tgu-mir-218-2, tgu-mir-99-1, tgu-mir-99-2, tgu-mir-2989-1, tgu-mir-2989-2, tgu-let-7g-1, tgu-let-7g-2, tgu-mir-122, tgu-let-7f, tgu-mir-451, tgu-let-7d, tgu-mir-34b, tgu-mir-24, tgu-mir-137, tgu-mir-2992, tgu-mir-153-1, tgu-mir-153-2, tgu-mir-142, tgu-mir-15a, tgu-mir-1-2, tgu-mir-1-1, tgu-mir-204-1, tgu-mir-204-2, tgu-mir-204-3, tgu-mir-204-4, tgu-mir-92-1, tgu-mir-92-2, tgu-mir-106, tgu-mir-144, tgu-mir-214, tgu-mir-2997, tgu-mir-455, tgu-mir-204-5, tgu-mir-192, tgu-mir-499, tgu-mir-7643, tgu-mir-7644, tgu-mir-7645 Many of these miRNAs show enriched expression in the brain, including several (miR-25, miR-192, miR-124, miR-129, and miR-92) that are regulated in the auditory forebrain by song exposure [35], indicating that miRNAs may play important roles in song behavior and neural plasticity. [score:4] [1 to 20 of 1 sentences]
3	[+] score: 1 Other miRNAs from this paper: tgu-mir-2954, tgu-mir-9-2, tgu-mir-9-1, tgu-mir-140, tgu-mir-92-1, tgu-mir-92-2 Intriguingly, both of these were also identified as song-responsive in our previous RNA-seq analysis, with miR-25 increasing and miR-92 decreasing upon song exposure (Gunaratne et al., 2011). [score:1] [1 to 20 of 1 sentences]

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3 publications mentioning tgu-mir-25

Open access articles that are associated with the species Taeniopygia guttata and mention the gene name mir-25. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

[+] score: 8

Other miRNAs from this paper: hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3, hsa-let-7f-1, hsa-let-7f-2, hsa-mir-25, hsa-mir-29a, hsa-mir-92a-1, hsa-mir-92a-2, hsa-mir-192, hsa-mir-129-1, hsa-mir-219a-1, hsa-mir-124-1, hsa-mir-124-2, hsa-mir-124-3, hsa-mir-132, hsa-mir-9-1, hsa-mir-9-2, hsa-mir-9-3, hsa-mir-129-2, hsa-mir-134, hsa-mir-29c, hsa-mir-219a-2, gga-mir-29a, gga-let-7a-3, gga-mir-92-1, gga-mir-124a, gga-let-7f, gga-let-7a-1, gga-mir-219a, gga-mir-124b, gga-let-7a-2, gga-mir-29c, gga-mir-9-2, hsa-mir-92b, gga-mir-9-1, gga-mir-124a-2, gga-mir-2954, tgu-mir-219b, tgu-mir-2954, tgu-mir-2976-1, tgu-mir-2976-3, tgu-mir-2976-2, tgu-mir-2985-1, tgu-mir-2985-2, tgu-mir-129, tgu-mir-9-2, tgu-mir-9-1, tgu-mir-124-1, tgu-mir-124-2, tgu-mir-124-3, tgu-let-7a-1, tgu-let-7a-3, tgu-let-7a-2, tgu-let-7a-4, tgu-let-7f, tgu-mir-29a-1, tgu-mir-29a-2, tgu-mir-219a, tgu-mir-92-1, tgu-mir-92-2, gga-mir-219b, tgu-mir-192, tgu-mir-132, hsa-mir-219b, gga-mir-124c, gga-mir-9-3, gga-mir-92-2, gga-mir-9-4, gga-mir-2985-1, gga-mir-9b-1, gga-mir-132a, gga-mir-132b, gga-mir-132c, gga-mir-2985-2, gga-mir-129-1, gga-mir-129-2, gga-mir-129-3, gga-mir-9b-2

Probe sequences used for each target miRNA are given in Table 4. Table 4 Probes used for Taqman analysis of specific miRNA sequences miRBase name Company name Sequence detected tgu-let-7a let-7a 5'-UGAGGUAGUAGGUUGUAUAGUU-3' tgu-let-7f let-7f 5'-UGAGGUAGUAGAUUGUAUAGUU-3' tgu-miR-124 miR-124 5'-UAAGGCACGCGGUGAAUGCC-3' tgu-miR-9 miR-9 5'-UCUUUGGUUAUCUAGCUGUAUGA-3' tgu-miR-129-5p miR-129-5p 5'-CUUUUUGCGGUCUGGGCUUGC-3' tgu-miR-129-3p miR-129-3p 5'-AAGCCCUUACCCCAAAAAGCAU-3' tgu-miR-29a miR-29c 5'-UAGCACCAUUUGAAAUCGGU-3' tgu-miR-92 miR-92a 5'-UAUUGCACUUGUCCCGGCCUGU-3' tgu-miR-25 miR-25 5'-CAUUGCACUUGUCUCGGUCUGA-3' RNU6B RNU6B 5'-CGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUUU-3' tgu-miR-2954-5p novel51F-5p 5'-GCUGAGAGGGCUUGGGGAGAGGA-3' tgu-miR-2954-3p novel51F-3p 5'-CAUCCCCAUUCCACUCCUAGCA-3' (Northern validated) tgu-miR-2954R-5p novel51R-5p 5'-UGCUAGGAGUGGAAUGGGGAUG-3' tgu-miR-2954R-3p novel51R-3p 5'-UCCUCUCCCCAAGCCCUCUCAGC-3' Northern blotting to confirm novel miRNA tgu-miR-2954-3p was performed by modifying the protocol of [97]. [score:3]

Five conserved miRNAs showed significant and consistent changes in copy number after song exposure across three biological replications of the song-silence comparison, with two increasing (tgu-miR-25, tgu-miR-192) and three decreasing (tgu-miR-92, tgu-miR-124, tgu-miR-129-5p). [score:1]

Three miRNAs consistently decreased after song (tgu-miR-92, tgu-miR-124, tgu-miR-129-5p) and two increased (tgu-miR-25, tgu-miR-192). [score:1]

[1 to 20 of 4 sentences]

[+] score: 4

Other miRNAs from this paper: tgu-mir-2955, tgu-mir-2956-1, tgu-mir-2956-2, tgu-mir-2963, tgu-mir-456, tgu-mir-425, tgu-mir-2954, tgu-mir-2973, tgu-mir-2978, tgu-mir-2983, tgu-mir-2984, tgu-mir-2987, tgu-mir-129, tgu-mir-9-2, tgu-mir-9-1, tgu-let-7i, tgu-mir-124-1, tgu-mir-124-2, tgu-mir-124-3, tgu-mir-101-1, tgu-mir-101-2, tgu-let-7b, tgu-mir-7-1, tgu-mir-7-2, tgu-mir-7-3, tgu-mir-7-4, tgu-let-7e, tgu-let-7a-1, tgu-let-7a-3, tgu-let-7a-2, tgu-let-7a-4, tgu-let-7c-1, tgu-let-7c-2, tgu-mir-218-1, tgu-mir-218-2, tgu-mir-99-1, tgu-mir-99-2, tgu-mir-2989-1, tgu-mir-2989-2, tgu-let-7g-1, tgu-let-7g-2, tgu-mir-122, tgu-let-7f, tgu-mir-451, tgu-let-7d, tgu-mir-34b, tgu-mir-24, tgu-mir-137, tgu-mir-2992, tgu-mir-153-1, tgu-mir-153-2, tgu-mir-142, tgu-mir-15a, tgu-mir-1-2, tgu-mir-1-1, tgu-mir-204-1, tgu-mir-204-2, tgu-mir-204-3, tgu-mir-204-4, tgu-mir-92-1, tgu-mir-92-2, tgu-mir-106, tgu-mir-144, tgu-mir-214, tgu-mir-2997, tgu-mir-455, tgu-mir-204-5, tgu-mir-192, tgu-mir-499, tgu-mir-7643, tgu-mir-7644, tgu-mir-7645

Many of these miRNAs show enriched expression in the brain, including several (miR-25, miR-192, miR-124, miR-129, and miR-92) that are regulated in the auditory forebrain by song exposure [35], indicating that miRNAs may play important roles in song behavior and neural plasticity. [score:4]

[1 to 20 of 1 sentences]

[+] score: 1

Other miRNAs from this paper: tgu-mir-2954, tgu-mir-9-2, tgu-mir-9-1, tgu-mir-140, tgu-mir-92-1, tgu-mir-92-2

Intriguingly, both of these were also identified as song-responsive in our previous RNA-seq analysis, with miR-25 increasing and miR-92 decreasing upon song exposure (Gunaratne et al., 2011). [score:1]

[1 to 20 of 1 sentences]