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23 publications mentioning tae-MIR169

Open access articles that are associated with the species Triticum aestivum and mention the gene name MIR169. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 25
Other miRNAs from this paper: osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR395b, osa-MIR395d, osa-MIR395e, osa-MIR395g, osa-MIR395h, osa-MIR395i, osa-MIR395j, osa-MIR395k, osa-MIR395l, osa-MIR395s, osa-MIR395t, osa-MIR395c, osa-MIR395a, osa-MIR395f, osa-MIR395u, osa-MIR398a, osa-MIR398b, osa-MIR160e, osa-MIR160f, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR167j, osa-MIR437, osa-MIR395m, osa-MIR395n, osa-MIR395o, osa-MIR395p, osa-MIR395q, osa-MIR395v, osa-MIR395w, osa-MIR395r, osa-MIR818a, osa-MIR818b, osa-MIR818c, osa-MIR818d, osa-MIR818e, tae-MIR160, tae-MIR167a, tae-MIR1117, tae-MIR1118, tae-MIR1120a, tae-MIR1122a, tae-MIR1125, tae-MIR1127a, tae-MIR1128, tae-MIR1131, tae-MIR1133, tae-MIR1135, tae-MIR1136, tae-MIR1139, osa-MIR169r, osa-MIR1436, osa-MIR1439, osa-MIR2118a, osa-MIR2118b, osa-MIR2118c, osa-MIR2118d, osa-MIR2118e, osa-MIR2118f, osa-MIR2118g, osa-MIR2118h, osa-MIR2118i, osa-MIR2118j, osa-MIR2118k, osa-MIR2118l, osa-MIR2118m, osa-MIR2118n, osa-MIR2118o, osa-MIR2118p, osa-MIR2118q, osa-MIR2118r, bdi-MIR167a, bdi-MIR1139, bdi-MIR1122, bdi-MIR437, bdi-MIR169b, bdi-MIR1127, bdi-MIR1135, osa-MIR395x, osa-MIR395y, tae-MIR167b, tae-MIR395a, tae-MIR395b, tae-MIR398, tae-MIR5085, bdi-MIR5070, bdi-MIR169d, bdi-MIR169i, bdi-MIR395a, bdi-MIR169j, bdi-MIR160a, bdi-MIR395b, bdi-MIR167b, bdi-MIR160b, bdi-MIR167c, bdi-MIR169k, bdi-MIR160c, bdi-MIR167d, bdi-MIR169g, bdi-MIR160d, bdi-MIR160e, bdi-MIR169e, bdi-MIR398a, bdi-MIR169a, bdi-MIR169h, bdi-MIR169c, bdi-MIR395c, bdi-MIR5180b, bdi-MIR5175a, bdi-MIR5175b, bdi-MIR395d, bdi-MIR398b, bdi-MIR5180a, bdi-MIR169f, bdi-MIR395m, bdi-MIR395e, bdi-MIR395f, bdi-MIR395g, bdi-MIR395h, bdi-MIR395j, bdi-MIR395k, bdi-MIR395l, bdi-MIR395n, osa-MIR818f, bdi-MIR167e, bdi-MIR395o, bdi-MIR395p, bdi-MIR5049, bdi-MIR160f, bdi-MIR167f, bdi-MIR167g, bdi-MIR169l, bdi-MIR169m, bdi-MIR169n, bdi-MIR395q, bdi-MIR2118a, bdi-MIR2118b, tae-MIR1122b, tae-MIR1127b, tae-MIR1122c, tae-MIR167c, tae-MIR5175, tae-MIR1120b, tae-MIR1120c, tae-MIR6197, tae-MIR5049
Other miRNAs included in this study (miR169, miR5085, miR6220, miR2118) may also be expressed, under stress conditions, in other wheat tissues and/or at different developmental stages. [score:4]
In order to show expression of selected pre-miRNAs (pre-miR2118, pre-miR169, pre-miR5085, pre-miR6220, pre-miR5070), RT-PCR and qRT-PCR was performed using Chinese Spring cDNA. [score:3]
0069801.g002 Figure 2PCR screening of pre-miRNA coding sequences in flow sorted 5D short and long chromosome arms (5DS and 5DL); Triticum aestivum L. cv Chinese Spring (CS) and nullitetrasomic lines (N5D-T5A and N5D-T5B) (A) pre-miR169 (B) pre-miR5085 (C) pre miR5070 (D) pre-miR6220 (E) pre-miR2118. [score:1]
PCR screening of pre-miRNA coding sequences in flow sorted 5D short and long chromosome arms (5DS and 5DL); Triticum aestivum L. cv Chinese Spring (CS) and nullitetrasomic lines (N5D-T5A and N5D-T5B) (A) pre-miR169 (B) pre-miR5085 (C) pre miR5070 (D) pre-miR6220 (E) pre-miR2118. [score:1]
0069801.g004 Figure 4q-RT PCR (A) Five miRNA coding regions (pre-miR169, pre-miR5085, pre-miR6220 and pre-miR5070) in Triticum aestivum L. cv Chinese Spring (CS) B) Levels of non 5D-specific miR5070, detected by qRT-PCR in nullitetrasomic line (N5D-T5A) and Triticum aestivum L. cv Chinese Spring (CS). [score:1]
miR2118 was shown to be located on both arms of the 5D chromosome (5D specific), while miR5085 and miR169 were found to be specific to the long arm (Figure 2). [score:1]
In this study, five pre-miRNA (miR169, miR5085, miR2118, miR6220, miR2118) coding sequences were verified to be located to the 5D chromosome (Figure 2). [score:1]
q-RT PCR (A) Five miRNA coding regions (pre-miR169, pre-miR5085, pre-miR6220 and pre-miR5070) in Triticum aestivum L. cv Chinese Spring (CS) B) Levels of non 5D-specific miR5070, detected by qRT-PCR in nullitetrasomic line (N5D-T5A) and Triticum aestivum L. cv Chinese Spring (CS). [score:1]
PCR screening of 5DL specific pre-miRNA coding sequences (A) pre-miR169 (B) pre-miR5085 in Triticum aestivum L. cv Chinese Spring (CS) deletion lines (5DS-2, 5DS-5, 5DL-5, 5DL7) (C) Fraction length values of deletion lines. [score:1]
2.5 mM MgCl [2] (stock concentration : 25 mM) was used for the amplification of miR6220, miR5070 and miR2118 and this value was optimized to 2 mM and 3 mM for the miR5085 and miR169 amplicons. [score:1]
Three of these pre-miRNAs (miR169, miR5085, miR2118) were shown to be 5D specific (Figure 2). [score:1]
Independent studies in different plant species including A. thaliana, O. sativa,and Populus trichocarpashowed drought stress responsiveness of miR160,miR167, miR169, miR1125, and miR398, which were also found in wheat chromosome 5D [55]– [57]. [score:1]
Coding regions of both 5DL specific pre-miRNAs (pre-miR5085, pre-miR169) were found to be located between the breakpoint of 5DL-7 (FL : 0.29) and the centromere (Figure 3). [score:1]
To experimentally validate 5D chromosome localization of selected pre-miRNAs (miR169, miR5085, miR2118, miR5070, miR6220), PCR screening was carried out using DNA from flow-sorted 5D chromosome arms. [score:1]
0069801.g003 Figure 3PCR screening of 5DL specific pre-miRNA coding sequences (A) pre-miR169 (B) pre-miR5085 in Triticum aestivum L. cv Chinese Spring (CS) deletion lines (5DS-2, 5DS-5, 5DL-5, 5DL7) (C) Fraction length values of deletion lines. [score:1]
Our experimental results supported our in silico predictions: 5DS was verified to harbour regions coding for pre-miR2118 and pre-miR5070, and 5DL was confirmeded to contain both of the above plus pre-miR6220, pre-miR5085 and miR169 coding regions. [score:1]
For instance, in several reports, miR169 was implicated in a broad range of stress responsive mechanisms including nitrogen starvation, arsenic, salt and drought stresses and response to virus infection [69]– [73]. [score:1]
pre-miR169, pre-miR5085 and pre-miR2118 coding regions were found to be 5D chromosome-specific. [score:1]
Quantification with real-time PCR using CS gDNA suggested that coding regions of the selected pre-miRNAs had variable copy number: pre-miR169, pre-miR5085 and pre-miR5070 were shown to have approximately 8.6, 2.2 and 1.5 fold more copies than pre-miR6220. [score:1]
5DL specific pre-miRNA (miR169, miR5085) coding sequences were shown to be located between the centromer and the breakpoint present in 5DL-7 (FL : 0.29) deletion line (Figure 3). [score:1]
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2
[+] score: 23
Other miRNAs from this paper: osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR164a, osa-MIR164b, osa-MIR166a, osa-MIR166b, osa-MIR166c, osa-MIR166d, osa-MIR166e, osa-MIR166f, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR396a, osa-MIR396b, osa-MIR396c, osa-MIR397a, osa-MIR397b, osa-MIR398a, osa-MIR398b, osa-MIR156k, osa-MIR156l, osa-MIR159a, osa-MIR159b, osa-MIR159c, osa-MIR159d, osa-MIR159e, osa-MIR159f, osa-MIR160e, osa-MIR160f, osa-MIR164c, osa-MIR164d, osa-MIR164e, osa-MIR166k, osa-MIR166l, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR168a, osa-MIR168b, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR171b, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR166g, osa-MIR166h, osa-MIR166i, osa-MIR172d, osa-MIR167j, osa-MIR166m, osa-MIR166j, osa-MIR164f, zma-MIR156d, zma-MIR156f, zma-MIR156g, zma-MIR156b, zma-MIR156c, zma-MIR156e, zma-MIR156a, zma-MIR156h, zma-MIR156i, zma-MIR160a, zma-MIR160c, zma-MIR160d, zma-MIR160b, zma-MIR164a, zma-MIR164d, zma-MIR164b, zma-MIR164c, zma-MIR169a, zma-MIR169b, zma-MIR167a, zma-MIR167b, zma-MIR167d, zma-MIR167c, zma-MIR160e, zma-MIR166a, zma-MIR166h, zma-MIR166e, zma-MIR166i, zma-MIR166f, zma-MIR166g, zma-MIR166b, zma-MIR166c, zma-MIR166d, zma-MIR171b, zma-MIR172a, zma-MIR172d, zma-MIR172b, zma-MIR172c, osa-MIR396e, zma-MIR396b, zma-MIR396a, zma-MIR156j, zma-MIR159a, zma-MIR159b, zma-MIR159c, zma-MIR159d, zma-MIR166k, zma-MIR166j, zma-MIR167e, zma-MIR167f, zma-MIR167g, zma-MIR167h, zma-MIR167i, zma-MIR168a, zma-MIR168b, zma-MIR169c, zma-MIR169f, zma-MIR169g, zma-MIR169h, zma-MIR169i, zma-MIR169k, zma-MIR169j, zma-MIR169d, zma-MIR169e, zma-MIR172e, zma-MIR166l, zma-MIR166m, zma-MIR156k, zma-MIR160f, tae-MIR159a, tae-MIR159b, tae-MIR160, tae-MIR164, tae-MIR167a, tae-MIR1127a, osa-MIR169r, osa-MIR396f, zma-MIR396c, zma-MIR396d, osa-MIR2275a, osa-MIR2275b, zma-MIR2275a, zma-MIR2275b, zma-MIR2275c, zma-MIR2275d, osa-MIR396g, osa-MIR396h, osa-MIR396d, zma-MIR156l, zma-MIR159e, zma-MIR159f, zma-MIR159g, zma-MIR159h, zma-MIR159i, zma-MIR159j, zma-MIR159k, zma-MIR160g, zma-MIR164e, zma-MIR164f, zma-MIR164g, zma-MIR164h, zma-MIR166n, zma-MIR167j, zma-MIR169l, zma-MIR169m, zma-MIR169n, zma-MIR169o, zma-MIR169p, zma-MIR169q, zma-MIR169r, zma-MIR396e, zma-MIR396f, zma-MIR396g, zma-MIR396h, zma-MIR397a, zma-MIR397b, zma-MIR398a, zma-MIR398b, hvu-MIR156a, tae-MIR156, hvu-MIR159b, hvu-MIR159a, hvu-MIR166a, tae-MIR167b, hvu-MIR168, hvu-MIR169, hvu-MIR397a, tae-MIR398, tae-MIR171b, hvu-MIR166b, hvu-MIR166c, osa-MIR2275c, osa-MIR2275d, tae-MIR1122b, tae-MIR9653a, tae-MIR9654a, tae-MIR9656, tae-MIR9657a, tae-MIR9659, tae-MIR9660, tae-MIR1127b, tae-MIR9661, tae-MIR396, tae-MIR9665, tae-MIR2275, tae-MIR9667, tae-MIR167c, tae-MIR1120b, tae-MIR397, tae-MIR1130b, tae-MIR5384, tae-MIR9675, tae-MIR1120c, tae-MIR9679, tae-MIR9657b, hvu-MIR397b, hvu-MIR156b, tae-MIR9653b
miR169 targets a CCAAT-box transcription factor, which is involved in diverse processes, such as embryo development, flowering time control and root development [53]. [score:5]
These results suggested that miR171b*, miR1127* and miR169* might be de facto miRNAs with important regulatory functions in specific tissues and developmental stages. [score:3]
Four of the 15 known miRNA families, including miR169, miR166, miR164 and miR160 were preferentially expressed in the developing seeds with the logarithm of the fold changes of 0.3 ~ 3.0. [score:3]
Of the 15 known miRNA families, 4 (miR169, miR166, miR164 and miR160) were preferentially expressed in the developing seeds (with the logarithm of the fold changes of 0.3 ~ 3.0 in the developing seeds, more than those in the flag leaves) (Figure  3a, Table  2). [score:3]
From 5 days post-anthesis to 20 days post-anthesis, miR164 and miR160 increased in abundance in the developing seeds, whereas miR169 decreased, suggesting their coordinating functions in the different developmental stages of wheat seed. [score:2]
The decreased abundance of miR169 from the 5-d seeds to the 20-d seeds was coordinated with its functions in seed development. [score:2]
From 5 days post-anthesis to 20 days post-anthesis, miR164 and miR160 increased in abundance, whereas miR169 decreased, suggesting that these miRNAs have coordinating functions in the different developmental stages of wheat seed. [score:2]
However, mature miRNA sequences for miR171b*, miR1127* and miR169* were not found in any of the five tissues tested. [score:1]
From 5 DPA to 20 DPA, miR164 and miR160 increased in abundance, whereas miR169 decreased (Figure  3a, Table  2). [score:1]
The highest level of miR169* was observed in the seedlings (28 reads), followed by the flag leaves (5 reads). [score:1]
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3
[+] score: 19
miR169 from barley was detected as upregulated in leaves while it is downregulated in roots. [score:7]
miR169 which is characterized as targeting nuclear transcription factor Y (NF-Y) in several plants, such as maize and Arabidopsis, is upregulated both in heat- and cold-stressed wheat (Ni et al. 2013; Gupta et al. 2014; Kumar et al. 2014b; Sorin et al. 2014; Luan et al. 2015). [score:4]
Although the exact mechanism of action is not known, the overexpression of the miR169/NF-YA module improved drought resistance in Arabidopsis (Li et al. 2008). [score:3]
durum, T. aestivum –Liu et al. 2015a, Ma et al. 2015, Akpinar and Budak 2016 miR168 T. aestivum –Gupta et al. 2014, Ma et al. 2015 miR169 H. vulgare –Hackenberg et al. 2014 miR171 T. turgidum ssp. [score:1]
siRNAs generated from the cis-natural antisense transcript of drought-responsive NFYA5, NERF, were as effective as miR169 -mediated repression of NFYA5 (Gao et al. 2015). [score:1]
miR167, miR319, miR398, miR172, miR164, miR159, and miR169 are responsive to both heat and cold stresses Heat and cold stress result in distinct and independent modifications to cellular processes. [score:1]
Interestingly, some miRNA families, for example miR159, miR167, and miR169, were detected as responsive to multiple stresses (Budak et al. 2014; Sinha et al. 2015; Budak et al. 2015c). [score:1]
miR167, miR319, miR398, miR172, miR164, miR159, and miR169 are responsive to both heat and cold stresses Heat and cold stress result in distinct and independent modifications to cellular processes. [score:1]
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4
[+] score: 18
bdi-miR169 was significantly downregulated under H [2]O [2] stress in our study and a previous study in rice (Li et al., 2010); its target gene encodes a nuclear TF Y subunit A-2 (NF-YA-2) or NF-YA-4, which belongs to the CCAAT binding TF family. [score:6]
In Arabidopsis, the upregulation of NF-YA gene depends on the regulation of miR169 under drought stress (Li et al., 2008). [score:5]
The 10 downregulated known miRNAs were composed of three miRNA families, including five members of miR169, four members of miR160, and miR7770. [score:4]
As reported in a previous study (Li et al., 2011), a series of known H [2]O [2]-responsive miRNAs, including miR159, miR160, miR169, miR397, and miR528, were also identified in our study. [score:1]
Therefore, miR169 may play a crucial role in the process of resistance to oxidative stress in plants. [score:1]
However, only a few H [2]O [2]-responsive miRNAs (miR169, miR397, miR1425, miR408-5p, miR827, miR528, and miR319a. [score:1]
[1 to 20 of 6 sentences]
5
[+] score: 17
For example, miR156, miR169, miR171a, miR444c, miR827, and miR5048a were identified by sequencing as down-regulated. [score:4]
Moreover, as shown in Table  2, a significant number of transcripts detected by degradome sequencing have been reported previously such as miR156- SBP, miR172- AP2, miR160- ARF (Auxin Response Factor), miR169-NFYA (Nuclear transcription Factor Y subunit A), miR319- TCP, and MiR9863- NBS, indicating conserved miRNA-target interaction in plants. [score:3]
MiR169 as a big miRNA family in plants were detected with various expression in different tissues [9, 42], which also response to drought, salinity, heat and powdery mildew resistance [11, 43]. [score:3]
In addition, miR169 was identified to respond to cold stress by the regulation of NFYA in Arabidopsis [12, 13], Populus [15], and Brachypodium [16]. [score:2]
In addition, seven miRNAs, miR159, miR164, miR169, miR319, miR398, miR1029, and miR1126 were also identified to be cold-responsive in the seedling of wheat [9]. [score:1]
In Arabidopsis, 16 miRNAs, including miR156, miR159, miR164, miR165, miR168, miR169, miR172, miR319, miR389, miR393, miR396, miR397, miR398, miR400, miR402, and miR408, were identified by RNA gel blot analysis [12], microarray analysis [13], and a computation -based approach to be related to cold response [14]. [score:1]
In Populus, 19 cold stress-responsive miRNAs were identified by miRNA microarray [15], among which miR156, miR164, miR168, miR169, miR393, and miR396 were overlapped with those in Arabidopsis. [score:1]
Fig. 4Target plots (T-plots) of miR156 (a), miR159 (b), miR169 (c), and miR5028 (d) characterized by degradome sequencing. [score:1]
MiR169, miR172, miR156, miR319, miR159, and miR396 showed the cold-stress response in at least three species, and miR160, miR165, miR167, and miR171 overlapped with Populus, Arabidopsis, and Medicago (Additional file 1: Table S6). [score:1]
[1 to 20 of 9 sentences]
6
[+] score: 15
A detailed analysis indicated that miRNAs downregulated in response to heat stress, such as miR156, Tae-miR818 and miR169, primarily targeted transcripts associated with activation of signal transduction pathways and transcription factors such as receptor-like kinases, CCAAT and MIKC-type MADS-box transcription factors. [score:6]
Expression profiles of miR398, miR156 and miR169 family members and isomiRs all showed reduced expression in the early recovery period after heat stress (Fig. S5a–c). [score:5]
MiR169 was predicted to specifically target three members of the CCAAT-box transcription factor complex (Table 1). [score:2]
For instance, 14, 17, 18, 25 and 32 coding loci were identified for miR169 in Arabidopsis, Oryza, Zea, Vitis and Populus, respectively 44. [score:1]
Families miR167, miR169 and miR398 were represented by variants of five to seven of the length between 18 to 24-mers while miRNAs from miR399 and miR5205 were all 21 nt-long (Fig. 2b). [score:1]
[1 to 20 of 5 sentences]
7
[+] score: 12
Other miRNAs from this paper: tae-MIR167a, tae-MIR399, tae-MIR167b, tae-MIR167c
Consistently, target annotations of wheat transcriptome sequences identified several NF-Y subunits exclusively targeted by miR169 and miR2118 (Supplementary Table 3). [score:5]
miR169 has been identified as an abiotic stress-responsive miRNA family in plants, specifically targeting NF-YA subunit of Nuclear Transcription Factor Y (NF-Y) 48. [score:3]
It is tempting to speculate that the coding regions for miR2118 and miR169 on ancient B-genome might have been lost through wheat genome evolution due to functional redundancy in homoeologous genomes, while these regions are still retained in the B-genomes of tetraploid wild populations. [score:1]
Remarkably, the precursors of miR2118 and miR169 have been experimentally verified to be specific to the 5D chromosome of modern bread wheat 47. miR2118 family was also reported to be represented by 42 family members in Ae. [score:1]
Three other miRNA families with well-established roles in plants, miR167, miR169 and miR399, were also prominent (10.1%, 6.9% and 7.8%, respectively) among miRNAs putatively encoded by Tdic5B. [score:1]
Additionally, Tdic5B was found to encode 11 members of miR167 family, 10 members of miR169 family and 6 members of miR399 family. [score:1]
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8
[+] score: 10
Other miRNAs from this paper: osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR164a, osa-MIR164b, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR171a, osa-MIR393a, osa-MIR396a, osa-MIR396b, osa-MIR396c, osa-MIR397a, osa-MIR397b, osa-MIR399a, osa-MIR399b, osa-MIR399c, osa-MIR399d, osa-MIR399e, osa-MIR399f, osa-MIR399g, osa-MIR399h, osa-MIR399i, osa-MIR399j, osa-MIR399k, osa-MIR156k, osa-MIR156l, osa-MIR159a, osa-MIR159b, osa-MIR159c, osa-MIR159d, osa-MIR159e, osa-MIR159f, osa-MIR319a, osa-MIR319b, osa-MIR160e, osa-MIR160f, osa-MIR164c, osa-MIR164d, osa-MIR164e, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR168a, osa-MIR168b, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR171b, osa-MIR171c, osa-MIR171d, osa-MIR171e, osa-MIR171f, osa-MIR171g, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR171h, osa-MIR393b, osa-MIR408, osa-MIR172d, osa-MIR171i, osa-MIR167j, osa-MIR164f, osa-MIR390, osa-MIR439a, osa-MIR439b, osa-MIR439c, osa-MIR439d, osa-MIR439e, osa-MIR439f, osa-MIR439g, osa-MIR439h, osa-MIR439i, osa-MIR396e, osa-MIR444a, tae-MIR159a, tae-MIR159b, tae-MIR160, tae-MIR164, tae-MIR167a, tae-MIR171a, tae-MIR399, tae-MIR408, tae-MIR444a, osa-MIR169r, osa-MIR444b, osa-MIR444c, osa-MIR444d, osa-MIR444e, osa-MIR444f, osa-MIR396f, osa-MIR396g, osa-MIR396h, osa-MIR396d, tae-MIR156, tae-MIR319, tae-MIR167b, tae-MIR444b, tae-MIR171b, tae-MIR396, tae-MIR167c, tae-MIR397
Twelve conserved miRNA families (miR156/157, miR159/319, miR160, miR164, miR165/166, miR167, miR169, miR170/171, miR172 and miR444) have been predicted to target 24 transcription factors, including squamosa promoter binding proteins, MYB, NAC1, homeodomain-leucine zipper protein, auxin response factor, CCAAT -binding protein, scarecrow-like protein, APETELA2 protein and MADS box protein (Additional data file 2). [score:3]
The frequencies of the miRNA families varied from 2 (miR390, miR396, miR397, miR399) to 757 (miR169), indicating that expression varies highly among the different miRNA families in wheat (Figure 2). [score:3]
This analysis revealed perfect matching of nine miRNA families, miR159, miR160, miR164, miR167, miR169, miR170, miR399, miR408 and miR444, to 14 ESTs. [score:1]
Furthermore, our analysis revealed that the library included all known members of several miRNA families: miR156, miR159, miR167, miR169, miR168, miR171 and miR172. [score:1]
MiR169 was represented by five members, miR156, miR165/166, miR167, miR170/171 and miR172 were represented by three members each, and miR159, miR319 and miR168 were represented by two members each in the library. [score:1]
These include miRNA156/157, miR159, miR160, miR164, miR165/166, miR167, miR168, miR169, miR170/171, miR172, miR319, miR390, miR393, miR396, miR397, miR399 and miR408, which are conserved in diverse plant species (Table 2). [score:1]
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9
[+] score: 10
Other miRNAs from this paper: hvu-MIR169
It was accompanied by up-regulation of both nitrogen and phosphorus uptake transporters in roots and down-regulation of (tae)- miR169, which in turn can regulate expression of NFYAs. [score:10]
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10
[+] score: 9
For example, miR172 was significantly decreased with 1.5 fold changes, and 8 miRNAs, including miR156, miR159, miR160, miR166, miR168, miR169, miR827, and miR2005, were up-regulated with the highest expression change of 2.9 fold for miR168. [score:6]
We also found 8 cases (miR156, miR159, miR172, miR167, miR169, miR396, miR399 and miR818) where all the members of a miRNA family were expressed at similar pattern in response to powdery mildew infection or heat stress. [score:3]
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[+] score: 8
For example, four abiotic stress -induced miRNA families, miR159, miR169, miR171, and miR172, are all target transcription factors involved in the regulation of gene function in cell differentiation and development in larch (Zhang et al., 2010). [score:5]
miR169, which targets the CCAAT-box transcription factor, might enhance dehydration stress tolerance by influencing ABA-responsive transcription in wheat (Ma et al., 2015). [score:3]
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12
[+] score: 6
c and d Screening of significant differentially expressed genes with Volcano chart by comparing SL1 and NN1, SL2 and NN2 There are several conserved miRNAs that have been reported to be essential for reproductive development in plants, including miR156/7, miR159, miR160, miR164, miR165/166, miR167, miR169, miR172, miR319 and miR396 [14]. [score:4]
Error bars indicated s. d. based on three biological replicates (** P < 0.01, Student’s t-test) There are several conserved miRNAs that have been reported to be essential for reproductive development in plants, including miR156/7, miR159, miR160, miR164, miR165/166, miR167, miR169, miR172, miR319 and miR396 [14]. [score:2]
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13
[+] score: 5
The expression of zma-miR169 and its targets exhibits diverse changes under drought as well as abscisic acid (ABA) and salt stress treatment in maize [9]. [score:5]
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[+] score: 5
Although different plant species may cope with stress using different miRNA -mediated regulatory strategies [42], some reported hub miRNAs, such as miR171, miR169, miR393 miR396, miR398 and miR1120, etc. [score:2]
A series of previously reported salinity-responsive miRNAs including miR160, miR169, miR171 were also identified in our study. [score:1]
miR156, miR169, miR396, etc. [score:1]
miR156, miR169, miR160, miR159, miR168, miR171, miR172, miR393 and miR396 were the most well-known salinity stress responsive miRNAs in plants summarized from previous studies in maize [18], rice [17], wheat [20, 39], barley [7] and sugarcane [40]. [score:1]
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15
[+] score: 4
Ni Z Hu Z Jiang Q Zhang H 2013 GmNFYA3, a target gene of miR169, is a positive regulator of plant tolerance to drought stress. [score:4]
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[+] score: 4
We employed a gene-specific 5′-rapid amplification of cDNA ends (RACE) assay to isolate cleavage remnants for 15 target genes, including 2 SPL genes for miR156, 1 ARF gene for miR160, 2 NAC genes for miR164, 2 HOMEOBOX-LEUCINE ZIPPER genes for miR166, 5 genes encoding nuclear transcription factor Y subunit A proteins for miR169, 1 scarecrow-like protein gene for miR171 and 1 AP2 gene for miR172, and 1 gene encoding a C3HC4 type zinc finger protein that was regulated by miR444 in wheat. [score:3]
Moreover, we also identified 30 wheat-specific variants from 9 highly conserved miRNA families, including miR159, miR160, miR167, miR169, miR171, miR172, miR393, miR396 and miR398 families (Additional file 3: Table S3). [score:1]
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17
[+] score: 3
Furthermore, the expression patters of many abiotic/biotic stress relative miRNAs have been sharply changed in this paper (S2 Table), such as miR169 [65], miR444 [66], miR1511 [67], miR5139 [20] and miR5368 [68] which were related to nitrogen-starvation responses, dehydration stress response, microbes response, ethylene, water deficit and rust-stress responses, respectively. [score:3]
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[+] score: 3
Another miRNA, miR169d, is a member of the miR169 family and targets the CCAAT-box transcription factor (CCAAT-box TF), which is one of the most common elements in eukaryotic promoters. [score:3]
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[+] score: 3
miRNAs are involved in various drought related cellular pathways, including auxin signaling, ABA response, antioxidant defense, osmoprotection, cell growth, respiration, and photosynthesis, e. g., miR169 shows bread wheat specific differential expression under drought (Ding et al., 2013). [score:3]
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[+] score: 2
Some miRNAs including miR156, miR159 miR169 and miR319 are associated with coordination of the relationship between development and stress responses [61]. [score:2]
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[+] score: 2
miR169 is one of the largest miRNA families that is conserved in all plant species and significantly contributes to proper plant development and in plant response to environmental stress [174]. [score:2]
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[+] score: 1
These 47 known miRNA sequences exhibited canonical hairpin loop structure and out of these only 8 miRNAs, namely miR156i-5p, miR164d, miR167, miR169, miR171, miR396a, miR396d and miR1432, were found to possess corresponding star sequences (also known as ‘3p sequence’) in the wheat putative sRNA population (Table S1 in File S1). [score:1]
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[+] score: 1
Interestingly, 65 of the identified rice lincRNAs were predicted to be ‘decoys’ of conserved miRNAs, such as miR160, miR164, miR168, miR169 and miR408 (Additional files 9 and 10). [score:1]
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