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7 publications mentioning tae-MIR1127b

Open access articles that are associated with the species Triticum aestivum and mention the gene name MIR1127b. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 22
Furthermore, 60S ribosomal protein L23 (RPL23) as the unique target gene of tae-miR9675-3p [34] and Defective in Anther Dehiscence1 (DAD1) [35], one of the targets of tae-miR1127b-3p, showed no obvious differential expression changes in SL plants (Additional file  19: Figure S7). [score:7]
The relative expression of selected targets from degradome data for miR156 (SPL17), miR159 (GAMYB), miR160 (ARF18), miR164 (CUC2), miR167 (ARF12) and miR1127b (DAD1). [score:5]
Surprisingly, a microRNA tae-miR1127b-3p that targets 124 annotated and unknown transcripts did not show significant differentially expression between SL and NN plants (Fig. 6), especially during critical period of MMC stage. [score:5]
The tae-miR1127b-3p targets the highest number of 124 annotated and unknown transcripts. [score:3]
Whereas, miR1122 and miR1127 were mainly involved in response to drought stress and dehydration stress [37– 39]. [score:1]
MiR1122 consisted of 8 members (tae-miR1122a, tae-miR1122b-3p, tae-miR1127a, tae-miR1127b-3p, tae-miR1128, tae-miR1133, tae-miR1135 and tae-miR1136). [score:1]
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2
[+] score: 20
Other miRNAs from this paper: osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR164a, osa-MIR164b, osa-MIR166a, osa-MIR166b, osa-MIR166c, osa-MIR166d, osa-MIR166e, osa-MIR166f, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR396a, osa-MIR396b, osa-MIR396c, osa-MIR397a, osa-MIR397b, osa-MIR398a, osa-MIR398b, osa-MIR156k, osa-MIR156l, osa-MIR159a, osa-MIR159b, osa-MIR159c, osa-MIR159d, osa-MIR159e, osa-MIR159f, osa-MIR160e, osa-MIR160f, osa-MIR164c, osa-MIR164d, osa-MIR164e, osa-MIR166k, osa-MIR166l, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR168a, osa-MIR168b, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR171b, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR166g, osa-MIR166h, osa-MIR166i, osa-MIR172d, osa-MIR167j, osa-MIR166m, osa-MIR166j, osa-MIR164f, zma-MIR156d, zma-MIR156f, zma-MIR156g, zma-MIR156b, zma-MIR156c, zma-MIR156e, zma-MIR156a, zma-MIR156h, zma-MIR156i, zma-MIR160a, zma-MIR160c, zma-MIR160d, zma-MIR160b, zma-MIR164a, zma-MIR164d, zma-MIR164b, zma-MIR164c, zma-MIR169a, zma-MIR169b, zma-MIR167a, zma-MIR167b, zma-MIR167d, zma-MIR167c, zma-MIR160e, zma-MIR166a, zma-MIR166h, zma-MIR166e, zma-MIR166i, zma-MIR166f, zma-MIR166g, zma-MIR166b, zma-MIR166c, zma-MIR166d, zma-MIR171b, zma-MIR172a, zma-MIR172d, zma-MIR172b, zma-MIR172c, osa-MIR396e, zma-MIR396b, zma-MIR396a, zma-MIR156j, zma-MIR159a, zma-MIR159b, zma-MIR159c, zma-MIR159d, zma-MIR166k, zma-MIR166j, zma-MIR167e, zma-MIR167f, zma-MIR167g, zma-MIR167h, zma-MIR167i, zma-MIR168a, zma-MIR168b, zma-MIR169c, zma-MIR169f, zma-MIR169g, zma-MIR169h, zma-MIR169i, zma-MIR169k, zma-MIR169j, zma-MIR169d, zma-MIR169e, zma-MIR172e, zma-MIR166l, zma-MIR166m, zma-MIR156k, zma-MIR160f, tae-MIR159a, tae-MIR159b, tae-MIR160, tae-MIR164, tae-MIR167a, tae-MIR1127a, osa-MIR169r, osa-MIR396f, zma-MIR396c, zma-MIR396d, osa-MIR2275a, osa-MIR2275b, zma-MIR2275a, zma-MIR2275b, zma-MIR2275c, zma-MIR2275d, osa-MIR396g, osa-MIR396h, osa-MIR396d, zma-MIR156l, zma-MIR159e, zma-MIR159f, zma-MIR159g, zma-MIR159h, zma-MIR159i, zma-MIR159j, zma-MIR159k, zma-MIR160g, zma-MIR164e, zma-MIR164f, zma-MIR164g, zma-MIR164h, zma-MIR166n, zma-MIR167j, zma-MIR169l, zma-MIR169m, zma-MIR169n, zma-MIR169o, zma-MIR169p, zma-MIR169q, zma-MIR169r, zma-MIR396e, zma-MIR396f, zma-MIR396g, zma-MIR396h, zma-MIR397a, zma-MIR397b, zma-MIR398a, zma-MIR398b, hvu-MIR156a, tae-MIR156, hvu-MIR159b, hvu-MIR159a, hvu-MIR166a, tae-MIR167b, hvu-MIR168, hvu-MIR169, tae-MIR169, hvu-MIR397a, tae-MIR398, tae-MIR171b, hvu-MIR166b, hvu-MIR166c, osa-MIR2275c, osa-MIR2275d, tae-MIR1122b, tae-MIR9653a, tae-MIR9654a, tae-MIR9656, tae-MIR9657a, tae-MIR9659, tae-MIR9660, tae-MIR9661, tae-MIR396, tae-MIR9665, tae-MIR2275, tae-MIR9667, tae-MIR167c, tae-MIR1120b, tae-MIR397, tae-MIR1130b, tae-MIR5384, tae-MIR9675, tae-MIR1120c, tae-MIR9679, tae-MIR9657b, hvu-MIR397b, hvu-MIR156b, tae-MIR9653b
tae-miR1127b which increased in abundance from the 5-d seeds to the 20-d seeds targets an amino acid permease gene, which is important for early seed development and plays a crucial for the uptake of amino acids into the endosperm and supplying amino acids for the developing embryo during early embryogenesis [45]. [score:4]
For example, seed-specific tae-miR1127b which were only present in developing seed (Additional file 5) targeted riboflavin biosynthesis protein Rib gene/amino acid permease gene, which function in seed development [45, 46]. [score:4]
Of the 55 novel miRNAs, 22 showed preferential expression in the different developmental stages of wheat seed (Figure  3b), with the logarithm of the fold change of 1.0 ~ 7.6, and half of these miRNAs (tae-miR1122b, tae-miR9653, tae-miR9654a, tae-miR9656, tae-miR9657a, tae-miR9659, tae-miR2275, tae-miR9665, tae-miR1127b, tae-miR9660, tae-miR9657b and tae-miR9667) were seed specific (Figure  3b, Additional file 5). [score:4]
However, we also observed a discrepancy between the qPCR and the sequencing data for novel miRNA tae-miR1127b (Figure  2b), which was expressed at extremely low level in the tissues tested (Additional file 5). [score:3]
These results suggested that miR171b*, miR1127* and miR169* might be de facto miRNAs with important regulatory functions in specific tissues and developmental stages. [score:3]
The highest accumulation of miR1127* was observed in the flag leaves (106 reads), followed by the 20-d seeds (53 reads). [score:1]
However, mature miRNA sequences for miR171b*, miR1127* and miR169* were not found in any of the five tissues tested. [score:1]
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3
[+] score: 12
Both the miR1127 and miR1436 families also targeted transcripts outside the Qss-3BL locus, including those involved in disease responses (Supplementary Table S2c). [score:5]
The miR1127 family from the Qss-3BL locus in bread wheat targeted a single transcript from the same region, pointing to a potential auto-regulatory circuit (Supplementary Table S2a); however, this family is not well characterized in plants, and its target transcript does not exhibit homology to any known plant protein, so the functional aspects of such a circuit could not be determined. [score:4]
Notably, this single transcript was involved in miRNA-target pairing with 23 unique mature miRNA isoforms from the miR1127 family, even though it did not appear among the DEGs between Choteau and Scholar under control conditions and WSS infestation. [score:3]
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4
[+] score: 7
Additionally, miR390, miR5071, miR2118, miR9863 and miR7757 were predicted to target the Leucine-rich Repeat Receptor-like protein kinase family (LRR) that are involved in disease resistance [53, 54], as well as miR1120, miR1127, miR1130, miR1137, miR1439, miR5049, miR5062, and miR9673 that regulated the WD domain gene for flower development and the immune system [55– 57] (Additional file 1: Table S7). [score:7]
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5
[+] score: 3
In TR39477 and TTD-22, the stress responsive lncRNAs TR_c65168_g7_i1 and TTD_c34631_g1_i1 were detected as the precursors of miR1127 which do not have any determined target in these transcriptome assemblies. [score:3]
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6
[+] score: 1
Other miRNAs from this paper: osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR395b, osa-MIR395d, osa-MIR395e, osa-MIR395g, osa-MIR395h, osa-MIR395i, osa-MIR395j, osa-MIR395k, osa-MIR395l, osa-MIR395s, osa-MIR395t, osa-MIR395c, osa-MIR395a, osa-MIR395f, osa-MIR395u, osa-MIR398a, osa-MIR398b, osa-MIR160e, osa-MIR160f, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR167j, osa-MIR437, osa-MIR395m, osa-MIR395n, osa-MIR395o, osa-MIR395p, osa-MIR395q, osa-MIR395v, osa-MIR395w, osa-MIR395r, osa-MIR818a, osa-MIR818b, osa-MIR818c, osa-MIR818d, osa-MIR818e, tae-MIR160, tae-MIR167a, tae-MIR1117, tae-MIR1118, tae-MIR1120a, tae-MIR1122a, tae-MIR1125, tae-MIR1127a, tae-MIR1128, tae-MIR1131, tae-MIR1133, tae-MIR1135, tae-MIR1136, tae-MIR1139, osa-MIR169r, osa-MIR1436, osa-MIR1439, osa-MIR2118a, osa-MIR2118b, osa-MIR2118c, osa-MIR2118d, osa-MIR2118e, osa-MIR2118f, osa-MIR2118g, osa-MIR2118h, osa-MIR2118i, osa-MIR2118j, osa-MIR2118k, osa-MIR2118l, osa-MIR2118m, osa-MIR2118n, osa-MIR2118o, osa-MIR2118p, osa-MIR2118q, osa-MIR2118r, bdi-MIR167a, bdi-MIR1139, bdi-MIR1122, bdi-MIR437, bdi-MIR169b, bdi-MIR1127, bdi-MIR1135, osa-MIR395x, osa-MIR395y, tae-MIR167b, tae-MIR169, tae-MIR395a, tae-MIR395b, tae-MIR398, tae-MIR5085, bdi-MIR5070, bdi-MIR169d, bdi-MIR169i, bdi-MIR395a, bdi-MIR169j, bdi-MIR160a, bdi-MIR395b, bdi-MIR167b, bdi-MIR160b, bdi-MIR167c, bdi-MIR169k, bdi-MIR160c, bdi-MIR167d, bdi-MIR169g, bdi-MIR160d, bdi-MIR160e, bdi-MIR169e, bdi-MIR398a, bdi-MIR169a, bdi-MIR169h, bdi-MIR169c, bdi-MIR395c, bdi-MIR5180b, bdi-MIR5175a, bdi-MIR5175b, bdi-MIR395d, bdi-MIR398b, bdi-MIR5180a, bdi-MIR169f, bdi-MIR395m, bdi-MIR395e, bdi-MIR395f, bdi-MIR395g, bdi-MIR395h, bdi-MIR395j, bdi-MIR395k, bdi-MIR395l, bdi-MIR395n, osa-MIR818f, bdi-MIR167e, bdi-MIR395o, bdi-MIR395p, bdi-MIR5049, bdi-MIR160f, bdi-MIR167f, bdi-MIR167g, bdi-MIR169l, bdi-MIR169m, bdi-MIR169n, bdi-MIR395q, bdi-MIR2118a, bdi-MIR2118b, tae-MIR1122b, tae-MIR1122c, tae-MIR167c, tae-MIR5175, tae-MIR1120b, tae-MIR1120c, tae-MIR6197, tae-MIR5049
Chr1 Chr2 Chr3 Chr4 Chr5 miR1127 * miR1128 * * * * * miR1133 * miR1135 * miR1139 * * * miR1439 * * * * * miR167 * miR395 * * miR5049 * * * * * miR5175 * * * miR5180 * * * miR5203 * * * * Bold miRNAs gave the best results that they were syntenic to Bd4. [score:1]
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[+] score: 1
Interestingly, wheat has several less-conserved miRNAs which were reported previously only in monocots, such as miR5054, miR5062, miR5064, miR5200, miR5203 in Brachypodium distachyon [40], miR5049, miR5048, miR6191, miR6203 in Hordeum vulgare [23, 41], miR1318, miR5071, miR5072, miR5073, miR5077, miR5082, miR5083, miR5538, miR818 in Oryza sativa [42], miR1125, miR1127, miR1136 in wheat [18]. [score:1]
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