Stem-loop tae-MIR1127b

Accession

MI0030379

Description

Triticum aestivum tae-MIR1127b precursor miRNA

Literature search

8 open access papers mention tae-MIR1127b
(21 sentences)

Sequence

21468 reads, 373.0 reads per million, 231 experiments

caugacagaugcuucUGUCCGGAAAUACUUGUCcuagaaaucgguguaucuagacuuauuuuaauuauagacacauccauuuuauccauuuauaagaCAAGUAUUUCUGGACGGAGGGAGUauuaua
.((((....(.((((((((((((((((((((((.(((((((.(((((.((((...............)))).))))).))))).........)).)))))))))))))))))))))).)...)))).

Structure

c    caga g                      c  ---------     c     a    gacuua 
 auga    u cuucUGUCCGGAAAUACUUGUC ua         gaaau ggugu ucua      u
 ||||    | |||||||||||||||||||||| ||         ||||| ||||| ||||      u
 uauu    A GGAGGCAGGUCUUUAUGAACag au         uuuua cuaca agau      u
a    -aUG G                      a  auuuaccua     c     c    auuaau 

Annotation confidence Low

Genome context

2A: 6474469-6474595 [+]

Mature tae-miR1127b-5p

• Accession: MIMAT0056515
• Description: Triticum aestivum tae-miR1127b-5p mature miRNA
• Sequence: 16 - UGUCCGGAAAUACUUGUC - 33
• Evidence: experimental ; unknown

Mature tae-miR1127b-3p

• Accession: MIMAT0035769
• Description: Triticum aestivum tae-miR1127b-3p mature miRNA
• Sequence: 98 - CAAGUAUUUCUGGACGGAGGGAGU - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24734873
   Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)
   Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H
   BMC Genomics (2014) 15:289