Accession
MI0000002
Description
Caenorhabditis elegans
cel-lin-4 precursor miRNA lin-4
Gene
family?
family?
RF00052;
lin-4
Literature search
49 open access papers mention cel-lin-4
(381 sentences)
(381 sentences)
Sequence
348252
reads,
1877
reads per million, 15 experiments
augcuuccggccuguUCCCUGAGACCUCAAGUGUGAguguacuauugaugcuucACACCUGGGCUCUCCGGGUACCaggacgguuugagcagau
.((((((((.((((..(((.((((.((((.(((((((.((((....).)))))))))).)))).)))).)))...)))).)))...)))))...
.((((((((.((((..(((.((((.((((.(((((((.((((....).)))))))))).)))).)))).)))...)))).)))...)))))...
Structure
--a --- g -uU U C A u - u ugcuu ccg ccug CCC GAGA CUCA GUGUGAg gua c a ||||| ||| |||| ||| |||| |||| ||||||| ||| | acgag ggc ggaC GGG CUCU GGGU CACAcuu cgu g u uag uuu a CAU C C C - a u
Annotation confidence
High
Do you think this miRNA is real?
Comments
lin-4 is found on chromosome II in Caenorhabditis elegans [1] and is complementary to sequences in the 3' untranslated region (UTR) of lin-14 mRNA. lin-4 acts to developmentally repress the accumulation of lin-14 protein. This repression is essential for the proper timing of numerous events of Caenorhabditis elegans larval development [2].
Genome context
chrII: 5902254-5902347 [+]
Database links
Mature cel-lin-4-5p
| Accession | MIMAT0000002 |
| Description | Caenorhabditis elegans cel-lin-4-5p mature miRNA |
| Sequence | 16 - UCCCUGAGACCUCAAGUGUGA - 36 |
| Evidence |
experimental
cloned [1,3-4], 454 [5], Illumina [6], CLIPseq [7] |
| Database links |
|
| Predicted targets |
|
Mature cel-lin-4-3p
| Accession | MIMAT0015092 |
| Description | Caenorhabditis elegans cel-lin-4-3p mature miRNA |
| Sequence | 55 - ACACCUGGGCUCUCCGGGUACC - 76 |
| Evidence |
experimental
CLIPseq [7] |
| Database links |
|
