Stem-loop cel-mir-78

Accession

MI0000049

Description

Caenorhabditis elegans cel-mir-78 precursor miRNA

Literature search

3 open access papers mention cel-mir-78
(3 sentences)

Sequence

38692 reads, 1224.0 reads per million, 89 experiments

aauaaaauauauuguuucauaguguccguaaaauaacuaGAUUUAUUUUGUAAAAACUauUGGAGGCCUGGUUGUUUGUGCuggaauguuucgaga
...........(((...(((....((((((((((((((((.(((.....((....)).....)))..)))))))))).))).))))))...)))..

Structure

aauaaaauaua   uuu   agug   -   -          -A   AUUUU  A 
           uug   cau    ucc gua aaauaacuaG  UUU     GU A
           |||   |||    ||| ||| ||||||||||  |||     ||  
           agc   gua    agg CGU UUUGUUGGUC  GAG     CA A
---------ag   uuu   ----   u   G          CG   GUuaU  A 

Annotation confidence Low

Genome context

chrIV: 15165647-15165742 [+]

Mature cel-miR-78-5p

• Accession: MIMAT0061469
• Description: Caenorhabditis elegans cel-miR-78-5p mature miRNA
• Sequence: 40 - GAUUUAUUUUGUAAAAACU - 58
• Evidence: experimental ; cloned [1-2], 454 [3], Illumina [4]

Mature cel-miR-78-3p

• Accession: MIMAT0000050
• Description: Caenorhabditis elegans cel-miR-78-3p mature miRNA
• Sequence: 61 - UGGAGGCCUGGUUGUUUGUGC - 81
• Evidence: experimental ; cloned [1-2], 454 [3], Illumina [4]

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862


2. PubMed ID: 12672692
   The microRNAs of Caenorhabditis elegans
   "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
   "Genes Dev (2003) 17:991-1008


3. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


4. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54