Stem-loop mmu-mir-135a-1

Accession

MI0000161

Symbol

MGI: Mir135a-1

Description

Mus musculus mmu-mir-135a-1 precursor miRNA

Literature search

73 open access papers mention mmu-mir-135a-1
(508 sentences)

Sequence

99102 reads, 1095 reads per million, 78 experiments

aggccucacuguucucUAUGGCUUUUUAUUCCUAUGUGAuucuauugcucgcucaUAUAGGGAUUGGAGCCGUGGCGuacggugaggaua
...(((((((((.(.((((((((((..((((((((((((.............)))))))))))).)))))))))).).)))))))))...

Structure

agg         u u          UU            uucua 
   ccucacugu c cUAUGGCUUU  AUUCCUAUGUGA     u
   ||||||||| | ||||||||||  ||||||||||||     u
   ggaguggca G GGUGCCGAGG  UAGGGAUAUacu     g
aua         u C          -U            cgcuc 

Annotation confidence High

Genome context

chr9: 106154124-106154213 [+]

Mature mmu-miR-135a-5p

• Accession: MIMAT0000147
• Description: Mus musculus mmu-miR-135a-5p mature miRNA
• Sequence: 17 - UAUGGCUUUUUAUUCCUAUGUGA - 39
• Evidence: experimental ; cloned [1,3], Illumina [4-5]

Mature mmu-miR-135a-1-3p

• Accession: MIMAT0004531
• Description: Mus musculus mmu-miR-135a-1-3p mature miRNA
• Sequence: 56 - UAUAGGGAUUGGAGCCGUGGCG - 77
• Evidence: experimental ; cloned [3], Illumina [4-5]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 12007417
   Identification of tissue-specific microRNAs from mouse
   "Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T"
   "Curr Biol (2002) 12:735-739


3. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


4. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


5. PubMed ID: 15634332
   New human and mouse microRNA genes found by homology search
   "Weber MJ"
   "FEBS J (2005) 272:59-73