Stem-loop mmu-mir-144

Accession

MI0000168

Symbol

MGI: Mir144

Description

Mus musculus mmu-mir-144 precursor miRNA mir-144

Gene
family

RF00682; mir-144

Literature search

69 open access papers mention mmu-mir-144
(928 sentences)

Sequence

214805 reads, 1124 reads per million, 78 experiments

ggcugGGAUAUCAUCAUAUACUGUAAGUuugugaugagacacUACAGUAUAGAUGAUGUACUaguc
((((((.((((((((.(((((((((.((((......))))..))))))))))))))))).))))))

Structure

      G        A         -A    gu 
ggcugG AUAUCAUC UAUACUGUA  GUuu  g
|||||| |||||||| |||||||||  ||||   
cugaUC UGUAGUAG AUAUGACAU  caga  a
      A        -         ca    gu 

Annotation confidence High

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context

chr11: 78073005-78073070 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mmu-mir-144

Mature mmu-miR-144-5p

• Accession: MIMAT0016988
• Description: Mus musculus mmu-miR-144-5p mature miRNA
• Sequence: 6 - GGAUAUCAUCAUAUACUGUAAGU - 28
• Evidence: experimental ; Illumina [4]

Mature mmu-miR-144-3p

• Accession: MIMAT0000156
• Description: Mus musculus mmu-miR-144-3p mature miRNA
• Sequence: 43 - UACAGUAUAGAUGAUGUACU - 62
• Evidence: experimental ; cloned [1-2], Illumina [3-4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 12007417
   Identification of tissue-specific microRNAs from mouse
   "Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T"
   "Curr Biol (2002) 12:735-739


3. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


4. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009