Stem-loop cel-mir-272

Accession

MI0000352

Description

Caenorhabditis elegans cel-mir-272 precursor miRNA

Literature search

1 open access papers mention cel-mir-272
(2 sentences)

Sequence

cgcaggcacgugcagguauguaggcaggcguaggcccguaggcaaguguaggucugcaggcaugaaUGUAGGCAUGGGUGUUUGgaagaccugcg
((((((....(.(((((((.((.((..((((..(((.((((((........)))))).)))....))))..)).)).))))))).)...))))))

Structure

      cacg g       g  g  ag    --ag   c      aag 
cgcagg    u cagguau ua gc  gcgu    gcc guaggc   u
||||||    | ||||||| || ||  ||||    ||| ||||||    
gcgucc    a GUUUGUG GU CG  UGUa    cgg cgucug   g
      -aga g       G  A  GA    agua   a      gau 

Annotation confidence Low

Comments

This sequence was predicted by computational approaches and validated using a PCR amplification protocol.

Genome context

chrIII: 11637966-11638060 [-]

Mature cel-miR-272

• Accession: MIMAT0000328
• Description: Caenorhabditis elegans cel-miR-272 mature miRNA
• Sequence: 67 - UGUAGGCAUGGGUGUUUG - 84
• Evidence: experimental ; PCR [1], Illumina [2]

References

1. PubMed ID: 12769849
   Computational and experimental identification of C. elegans microRNAs
   "Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J"
   "Mol Cell (2003) 11:1253-1263


2. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54