Stem-loop dme-mir-33

Accession

MI0000364

Description

Drosophila melanogaster dme-mir-33 precursor miRNA

Literature search

12 open access papers mention dme-mir-33
(25 sentences)

Sequence

500505 reads, 4717 reads per million, 49 experiments

cucuuccucuggagaugacacgaagGUGCAUUGUAGUCGCAUUGUCugucccaauugcuucaggCAAUACAACUUCAGUGCAAGCUcugugcauuucac
...........((((((.((((.((.(((((((.(((.(.((((((((............)))))))).).))).)))))))..)).))))))))))..

Structure

cucuuccucug      a    a  -G       U   C C        uccca 
           gagaug cacg ag  UGCAUUG AGU G AUUGUCug     a
           |||||| |||| ||  ||||||| ||| | ||||||||      
           cuuuac gugu UC  ACGUGAC UCA C UAACggac     u
---------ca      -    c  GA       U   A A        uucgu 

Annotation confidence High

Genome context

chr3L: 19797961-19798059 [+]

Mature dme-miR-33-5p

• Accession: MIMAT0000342
• Description: Drosophila melanogaster dme-miR-33-5p mature miRNA
• Sequence: 26 - GUGCAUUGUAGUCGCAUUGUC - 46
• Evidence: experimental ; 454 [2-3], Illumina [3]

Mature dme-miR-33-3p

• Accession: MIMAT0020808
• Description: Drosophila melanogaster dme-miR-33-3p mature miRNA
• Sequence: 65 - CAAUACAACUUCAGUGCAAGCU - 86
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


2. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879


3. PubMed ID: 12844358
   Computational identification of Drosophila microRNA genes
   "Lai EC, Tomancak P, Williams RW, Rubin GM"
   "Genome Biol (2003) 4:R42